Analysis of interatomic Contacts of Structural Units in PDB entry:
5UTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UTY entry

There are 6 chains in PDB entry 5UTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 517	ASP 659
D	GLN 1	PHE 224
E	SER 2	GLU 210
G	ALA 31	VAL 505
H	GLN 1	PRO 211
L	THR 8	ILE 47

There are 19 helices in PDB entry 5UTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	535	Right-handed alpha
Helix 2	AA2	B	537	546	Right-handed alpha
Helix 3	AA3	B	570	596	Right-handed alpha
Helix 4	AA4	B	619	624	Right-handed alpha
Helix 5	AA5	B	627	659	Right-handed alpha
Helix 6	AA6	D	61	64	Right-handed 310
Helix 7	AA7	D	83	87	Right-handed 310
Helix 8	AA8	E	181	187	Right-handed alpha
Helix 9	AA9	G	59	63	Right-handed 310
Helix 10	AB1	G	99	117	Right-handed alpha
Helix 11	AB2	G	335	350	Right-handed alpha
Helix 12	AB3	G	368	373	Right-handed alpha
Helix 13	AB4	G	475	483	Right-handed alpha
Helix 14	AB5	H	61	64	Right-handed 310
Helix 15	AB6	H	83	87	Right-handed 310
Helix 16	AB7	H	199	202	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	122	128	Right-handed alpha
Helix 19	AC1	L	182	189	Right-handed alpha

There are 32 sheets in PDB entry 5UTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	20	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	44	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	90	94	anti-parallel
Strand 5	D	102	103	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	74	75	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	130	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	176	182	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	130	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	176	182	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	205	210	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	131	139	anti-parallel
Strand 3	E	172	179	anti-parallel
Strand 4	E	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	131	139	anti-parallel
Strand 3	E	172	179	anti-parallel
Strand 4	E	165	166	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	200	206	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	216	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	154	159	anti-parallel
Strand 3	G	173	177	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	182	first strand
Strand 2	G	192	193	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	434	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	329	334	anti-parallel
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	376	378	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	274	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	466	470	anti-parallel
Strand 5	G	359	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	316	320	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	100	100	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	134	143	anti-parallel
Strand 3	H	174	182	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	103	106	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	71	75	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	48	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	89	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	138	anti-parallel
Strand 3	L	174	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	151	first strand
Strand 2	L	192	198	anti-parallel
Strand 3	L	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UTY