Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UUJ entry

There is 1 chain in PDB entry 5UUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5UUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
40 50Right-handed alpha
Helix 4
AA4
A
57 66Right-handed alpha
Helix 5
AA5
A
75 77Right-handed 310
Helix 6
AA6
A
83 85Right-handed 310
Helix 7
AA7
A
86 97Right-handed alpha
Helix 8
AA8
A
98 101Right-handed 310
Helix 9
AA9
A
102 110Right-handed alpha
Helix 10
AB1
A
112 127Right-handed alpha
Helix 11
AB2
A
134 143Right-handed alpha
Helix 12
AB3
A
147 149Right-handed 310
Helix 13
AB4
A
150 157Right-handed alpha
Helix 14
AB5
A
157 168Right-handed alpha
Helix 15
AB6
A
185 191Right-handed alpha
Helix 16
AB7
A
192 194Right-handed 310
Helix 17
AB8
A
199 216Right-handed alpha
Helix 18
AB9
A
219 229Right-handed alpha
Helix 19
AC1
A
233 245Right-handed alpha
Helix 20
AC2
A
264 271Right-handed alpha
Helix 21
AC3
A
284 289Right-handed alpha
Helix 22
AC4
A
299 301Right-handed 310
Helix 23
AC5
A
302 307Right-handed alpha
Helix 24
AC6
A
308 312Right-handed 310
Helix 25
AC7
A
346 362Right-handed alpha
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There are 4 sheets in PDB entry 5UUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
248 253parallel
Strand 3
A
256 261anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
70 73anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
182 184anti-parallel
Strand 3
A
172 173anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
316 319anti-parallel
Strand 3
A
322 330anti-parallel
Strand 4
A
333 338anti-parallel
Strand 5
A
368 370parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il