Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UUS entry

There are 4 chains in PDB entry 5UUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 66THR 238
A
 HIS 240GLY 273
B
 GLU 69THR 238
B
 HIS 240GLY 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5UUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 94Right-handed 310
Helix 2
AA2
A
108 112Right-handed 310
Helix 3
AA3
A
144 148Right-handed 310
Helix 4
AA4
A
173 182Right-handed alpha
Helix 5
AA5
A
186 196Right-handed alpha
Helix 6
AA6
A
211 216Right-handed 310
Helix 7
AA7
A
267 272Right-handed 310
Helix 8
AA8
B
91 94Right-handed 310
Helix 9
AA9
B
106 111Right-handed alpha
Helix 10
AB1
B
144 148Right-handed 310
Helix 11
AB2
B
173 183Right-handed alpha
Helix 12
AB3
B
186 196Right-handed alpha
Helix 13
AB4
B
211 216Right-handed 310
Helix 14
AB5
B
267 272Right-handed 310
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There are 2 sheets in PDB entry 5UUS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
247 260anti-parallel
Strand 3
A
232 240anti-parallel
Strand 4
A
127 132parallel
Strand 5
A
115 116anti-parallel
Strand 6
A
98 103parallel
Strand 7
A
84 89anti-parallel
Strand 8
A
153 158anti-parallel
Strand 9
A
161 167anti-parallel
Strand 10
A
247 260anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
247 260anti-parallel
Strand 3
B
232 240anti-parallel
Strand 4
B
127 132parallel
Strand 5
B
115 116anti-parallel
Strand 6
B
98 103parallel
Strand 7
B
84 89anti-parallel
Strand 8
B
153 158anti-parallel
Strand 9
B
161 167anti-parallel
Strand 10
B
247 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il