Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UUV entry

There are 4 chains in PDB entry 5UUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -1	SER 486
B	ASN -1	TYR 485
C	ALA 0	TYR 485
D	ASN -1	ILE 461

There are 58 helices in PDB entry 5UUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	4	Right-handed alpha
Helix 2	AA2	A	12	14	Right-handed 310
Helix 3	AA3	A	56	66	Right-handed alpha
Helix 4	AA4	A	77	91	Right-handed alpha
Helix 5	AA5	A	232	243	Right-handed alpha
Helix 6	AA6	A	257	271	Right-handed alpha
Helix 7	AA7	A	283	294	Right-handed alpha
Helix 8	AA8	A	309	314	Right-handed alpha
Helix 9	AA9	A	319	333	Right-handed alpha
Helix 10	AB1	A	346	356	Right-handed alpha
Helix 11	AB2	A	364	369	Right-handed alpha
Helix 12	AB3	A	427	447	Right-handed alpha
Helix 13	AB4	A	450	458	Right-handed alpha
Helix 14	AB5	A	464	472	Right-handed alpha
Helix 15	AB6	B	0	4	Right-handed alpha
Helix 16	AB7	B	12	14	Right-handed 310
Helix 17	AB8	B	56	66	Right-handed alpha
Helix 18	AB9	B	77	91	Right-handed alpha
Helix 19	AC1	B	232	242	Right-handed alpha
Helix 20	AC2	B	257	271	Right-handed alpha
Helix 21	AC3	B	283	294	Right-handed alpha
Helix 22	AC4	B	309	314	Right-handed alpha
Helix 23	AC5	B	319	333	Right-handed alpha
Helix 24	AC6	B	346	356	Right-handed alpha
Helix 25	AC7	B	364	369	Right-handed alpha
Helix 26	AC8	B	393	399	Right-handed alpha
Helix 27	AC9	B	427	447	Right-handed alpha
Helix 28	AD1	B	450	458	Right-handed alpha
Helix 29	AD2	B	464	472	Right-handed alpha
Helix 30	AD3	C	12	14	Right-handed 310
Helix 31	AD4	C	56	66	Right-handed alpha
Helix 32	AD5	C	77	90	Right-handed alpha
Helix 33	AD6	C	232	243	Right-handed alpha
Helix 34	AD7	C	257	271	Right-handed alpha
Helix 35	AD8	C	283	294	Right-handed alpha
Helix 36	AD9	C	309	314	Right-handed alpha
Helix 37	AE1	C	319	333	Right-handed alpha
Helix 38	AE2	C	346	356	Right-handed alpha
Helix 39	AE3	C	364	369	Right-handed alpha
Helix 40	AE4	C	393	400	Right-handed alpha
Helix 41	AE5	C	427	447	Right-handed alpha
Helix 42	AE6	C	450	458	Right-handed alpha
Helix 43	AE7	C	464	472	Right-handed alpha
Helix 44	AE8	D	0	4	Right-handed alpha
Helix 45	AE9	D	12	14	Right-handed 310
Helix 46	AF1	D	56	66	Right-handed alpha
Helix 47	AF2	D	77	91	Right-handed alpha
Helix 48	AF3	D	232	243	Right-handed alpha
Helix 49	AF4	D	257	271	Right-handed alpha
Helix 50	AF5	D	283	294	Right-handed alpha
Helix 51	AF6	D	309	314	Right-handed alpha
Helix 52	AF7	D	319	333	Right-handed alpha
Helix 53	AF8	D	346	356	Right-handed alpha
Helix 54	AF9	D	364	369	Right-handed alpha
Helix 55	AG1	D	393	399	Right-handed alpha
Helix 56	AG2	D	427	447	Right-handed alpha
Helix 57	AG3	D	450	458	Right-handed alpha
Helix 58	AG4	D	464	472	Right-handed alpha

There are 16 sheets in PDB entry 5UUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	D	460	462	parallel
Strand 3	D	16	18	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	460	462	anti-parallel
Strand 3	C	8	9	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	40	42	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	69	72	parallel
Strand 3	A	224	227	parallel
Strand 4	A	247	251	parallel
Strand 5	A	275	281	parallel
Strand 6	A	297	300	parallel
Strand 7	A	338	341	parallel
Strand 8	A	360	363	parallel
Strand 9	A	46	48	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	D	477	478	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	C	419	423	anti-parallel
Strand 3	C	383	389	anti-parallel
Strand 4	C	377	380	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	C	460	462	parallel
Strand 3	C	16	18	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	460	462	anti-parallel
Strand 3	D	8	9	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	40	42	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	69	72	parallel
Strand 3	B	224	227	parallel
Strand 4	B	247	251	parallel
Strand 5	B	276	281	parallel
Strand 6	B	297	300	parallel
Strand 7	B	338	341	parallel
Strand 8	B	360	363	parallel
Strand 9	B	46	48	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	383	389	anti-parallel
Strand 3	B	419	423	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	480	first strand
Strand 2	D	419	423	anti-parallel
Strand 3	D	383	389	anti-parallel
Strand 4	D	378	380	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	40	42	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	69	72	parallel
Strand 3	C	223	227	parallel
Strand 4	C	247	251	parallel
Strand 5	C	275	281	parallel
Strand 6	C	297	300	parallel
Strand 7	C	338	341	parallel
Strand 8	C	360	363	parallel
Strand 9	C	46	48	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	40	42	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	69	72	parallel
Strand 3	D	224	227	parallel
Strand 4	D	247	251	parallel
Strand 5	D	276	281	parallel
Strand 6	D	297	300	parallel
Strand 7	D	338	341	parallel
Strand 8	D	360	363	parallel
Strand 9	D	46	48	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUV