Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UUZ entry

There are 4 chains in PDB entry 5UUZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	SER 486
B	ASN -1	SER 486
C	SER -2	SER 486
D	PHE -4	GLU 456

There are129 helices in PDB entry 5UUZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-2	4	Right-handed alpha
Helix 2	AA2	A	12	14	Right-handed 310
Helix 3	AA3	A	26	30	Right-handed 310
Helix 4	AA4	A	56	66	Right-handed alpha
Helix 5	AA5	A	77	91	Right-handed alpha
Helix 6	AA6	A	232	243	Right-handed alpha
Helix 7	AA7	A	257	271	Right-handed alpha
Helix 8	AA8	A	283	293	Right-handed alpha
Helix 9	AA9	A	309	314	Right-handed alpha
Helix 10	AB1	A	319	334	Right-handed alpha
Helix 11	AB2	A	346	356	Right-handed alpha
Helix 12	AB3	A	364	369	Right-handed alpha
Helix 13	AB4	A	393	399	Right-handed alpha
Helix 14	AB5	A	427	447	Right-handed alpha
Helix 15	AB6	A	450	458	Right-handed alpha
Helix 16	AB7	A	464	472	Right-handed alpha
Helix 17	AB8	B	0	4	Right-handed alpha
Helix 18	AB9	B	12	14	Right-handed 310
Helix 19	AC1	B	26	30	Right-handed 310
Helix 20	AC2	B	56	66	Right-handed alpha
Helix 21	AC3	B	77	91	Right-handed alpha
Helix 22	AC4	B	232	243	Right-handed alpha
Helix 23	AC5	B	257	271	Right-handed alpha
Helix 24	AC6	B	283	294	Right-handed alpha
Helix 25	AC7	B	309	314	Right-handed alpha
Helix 26	AC8	B	319	332	Right-handed alpha
Helix 27	AC9	B	333	335	Right-handed 310
Helix 28	AD1	B	346	356	Right-handed alpha
Helix 29	AD2	B	364	369	Right-handed alpha
Helix 30	AD3	B	393	399	Right-handed alpha
Helix 31	AD4	B	427	447	Right-handed alpha
Helix 32	AD5	B	450	458	Right-handed alpha
Helix 33	AD6	B	464	472	Right-handed alpha
Helix 34	AD7	C	-1	4	Right-handed alpha
Helix 35	AD8	C	12	14	Right-handed 310
Helix 36	AD9	C	26	30	Right-handed 310
Helix 37	AE1	C	56	66	Right-handed alpha
Helix 38	AE2	C	77	91	Right-handed alpha
Helix 39	AE3	C	232	243	Right-handed alpha
Helix 40	AE4	C	257	271	Right-handed alpha
Helix 41	AE5	C	283	294	Right-handed alpha
Helix 42	AE6	C	309	314	Right-handed alpha
Helix 43	AE7	C	319	333	Right-handed alpha
Helix 44	AE8	C	346	356	Right-handed alpha
Helix 45	AE9	C	364	369	Right-handed alpha
Helix 46	AF1	C	393	398	Right-handed alpha
Helix 47	AF2	C	427	447	Right-handed alpha
Helix 48	AF3	C	450	458	Right-handed alpha
Helix 49	AF4	C	464	472	Right-handed alpha
Helix 50	AF5	D	-3	4	Right-handed alpha
Helix 51	AF6	D	12	14	Right-handed 310
Helix 52	AF7	D	26	30	Right-handed 310
Helix 53	AF8	D	56	66	Right-handed alpha
Helix 54	AF9	D	77	91	Right-handed alpha
Helix 55	AG1	D	232	243	Right-handed alpha
Helix 56	AG2	D	257	271	Right-handed alpha
Helix 57	AG3	D	283	294	Right-handed alpha
Helix 58	AG4	D	309	314	Right-handed alpha
Helix 59	AG5	D	319	334	Right-handed alpha
Helix 60	AG6	D	346	356	Right-handed alpha
Helix 61	AG7	D	364	369	Right-handed alpha
Helix 62	AG8	D	393	398	Right-handed alpha
Helix 63	AG9	D	427	447	Right-handed alpha
Helix 64	AH1	D	450	458	Right-handed alpha
Helix 65	AH2	D	464	472	Right-handed alpha
Helix 66	AH3	E	-1	4	Right-handed alpha
Helix 67	AH4	E	12	14	Right-handed 310
Helix 68	AH5	E	26	30	Right-handed 310
Helix 69	AH6	E	56	66	Right-handed alpha
Helix 70	AH7	E	77	91	Right-handed alpha
Helix 71	AH8	E	232	243	Right-handed alpha
Helix 72	AH9	E	257	271	Right-handed alpha
Helix 73	AI1	E	283	293	Right-handed alpha
Helix 74	AI2	E	309	314	Right-handed alpha
Helix 75	AI3	E	319	334	Right-handed alpha
Helix 76	AI4	E	346	356	Right-handed alpha
Helix 77	AI5	E	364	369	Right-handed alpha
Helix 78	AI6	E	393	399	Right-handed alpha
Helix 79	AI7	E	427	447	Right-handed alpha
Helix 80	AI8	E	450	458	Right-handed alpha
Helix 81	AI9	E	464	472	Right-handed alpha
Helix 82	AJ1	F	0	4	Right-handed alpha
Helix 83	AJ2	F	12	14	Right-handed 310
Helix 84	AJ3	F	26	30	Right-handed 310
Helix 85	AJ4	F	56	66	Right-handed alpha
Helix 86	AJ5	F	77	91	Right-handed alpha
Helix 87	AJ6	F	232	243	Right-handed alpha
Helix 88	AJ7	F	257	271	Right-handed alpha
Helix 89	AJ8	F	283	293	Right-handed alpha
Helix 90	AJ9	F	309	314	Right-handed alpha
Helix 91	AK1	F	319	333	Right-handed alpha
Helix 92	AK2	F	346	356	Right-handed alpha
Helix 93	AK3	F	364	369	Right-handed alpha
Helix 94	AK4	F	393	398	Right-handed alpha
Helix 95	AK5	F	427	447	Right-handed alpha
Helix 96	AK6	F	450	458	Right-handed alpha
Helix 97	AK7	F	464	472	Right-handed alpha
Helix 98	AK8	G	-3	4	Right-handed alpha
Helix 99	AK9	G	12	14	Right-handed 310
Helix 100	AL1	G	26	30	Right-handed 310
Helix 101	AL2	G	56	66	Right-handed alpha
Helix 102	AL3	G	77	91	Right-handed alpha
Helix 103	AL4	G	232	243	Right-handed alpha
Helix 104	AL5	G	257	271	Right-handed alpha
Helix 105	AL6	G	283	294	Right-handed alpha
Helix 106	AL7	G	309	314	Right-handed alpha
Helix 107	AL8	G	319	333	Right-handed alpha
Helix 108	AL9	G	346	356	Right-handed alpha
Helix 109	AM1	G	364	369	Right-handed alpha
Helix 110	AM2	G	393	399	Right-handed alpha
Helix 111	AM3	G	427	447	Right-handed alpha
Helix 112	AM4	G	450	458	Right-handed alpha
Helix 113	AM5	G	464	472	Right-handed alpha
Helix 114	AM6	H	0	4	Right-handed alpha
Helix 115	AM7	H	12	14	Right-handed 310
Helix 116	AM8	H	26	30	Right-handed 310
Helix 117	AM9	H	56	66	Right-handed alpha
Helix 118	AN1	H	77	91	Right-handed alpha
Helix 119	AN2	H	232	243	Right-handed alpha
Helix 120	AN3	H	257	271	Right-handed alpha
Helix 121	AN4	H	283	293	Right-handed alpha
Helix 122	AN5	H	309	314	Right-handed alpha
Helix 123	AN6	H	319	333	Right-handed alpha
Helix 124	AN7	H	346	356	Right-handed alpha
Helix 125	AN8	H	364	369	Right-handed alpha
Helix 126	AN9	H	393	398	Right-handed alpha
Helix 127	AO1	H	427	447	Right-handed alpha
Helix 128	AO2	H	450	458	Right-handed alpha
Helix 129	AO3	H	464	472	Right-handed alpha

There are 32 sheets in PDB entry 5UUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	C	460	462	parallel
Strand 3	C	16	18	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	460	462	anti-parallel
Strand 3	B	8	9	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	40	42	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	69	72	parallel
Strand 3	A	224	227	parallel
Strand 4	A	247	251	parallel
Strand 5	A	275	281	parallel
Strand 6	A	297	300	parallel
Strand 7	A	338	341	parallel
Strand 8	A	360	363	parallel
Strand 9	A	46	48	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	B	419	423	anti-parallel
Strand 3	B	383	389	anti-parallel
Strand 4	B	378	380	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	460	462	anti-parallel
Strand 3	D	8	9	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	40	42	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	69	72	parallel
Strand 3	B	224	227	parallel
Strand 4	B	247	251	parallel
Strand 5	B	275	281	parallel
Strand 6	B	297	300	parallel
Strand 7	B	338	341	parallel
Strand 8	B	360	363	parallel
Strand 9	B	46	48	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	D	419	423	anti-parallel
Strand 3	D	383	389	anti-parallel
Strand 4	D	378	380	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	D	460	462	parallel
Strand 3	D	16	18	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	40	42	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	69	72	parallel
Strand 3	C	224	227	parallel
Strand 4	C	247	251	parallel
Strand 5	C	275	281	parallel
Strand 6	C	297	300	parallel
Strand 7	C	338	341	parallel
Strand 8	C	360	363	parallel
Strand 9	C	46	48	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	383	389	anti-parallel
Strand 3	C	419	423	anti-parallel
Strand 4	D	477	478	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	40	42	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	69	72	parallel
Strand 3	D	224	227	parallel
Strand 4	D	247	251	parallel
Strand 5	D	275	281	parallel
Strand 6	D	297	300	parallel
Strand 7	D	338	341	parallel
Strand 8	D	360	363	parallel
Strand 9	D	46	48	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	G	460	462	parallel
Strand 3	G	16	18	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	460	462	anti-parallel
Strand 3	F	8	9	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	40	42	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	69	72	parallel
Strand 3	E	224	227	parallel
Strand 4	E	247	251	parallel
Strand 5	E	275	281	parallel
Strand 6	E	297	300	parallel
Strand 7	E	338	341	parallel
Strand 8	E	360	363	parallel
Strand 9	E	46	48	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	380	first strand
Strand 2	E	383	389	anti-parallel
Strand 3	E	419	423	anti-parallel
Strand 4	G	477	478	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	478	first strand
Strand 2	F	419	423	anti-parallel
Strand 3	F	383	389	anti-parallel
Strand 4	F	378	380	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	460	462	anti-parallel
Strand 3	H	8	9	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	41	42	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	69	72	parallel
Strand 3	F	224	227	parallel
Strand 4	F	247	251	parallel
Strand 5	F	275	281	parallel
Strand 6	F	297	300	parallel
Strand 7	F	338	341	parallel
Strand 8	F	360	363	parallel
Strand 9	F	46	48	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	478	first strand
Strand 2	H	419	423	anti-parallel
Strand 3	H	383	389	anti-parallel
Strand 4	H	378	380	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	H	460	462	parallel
Strand 3	H	16	18	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	37	first strand
Strand 2	G	40	42	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	69	72	parallel
Strand 3	G	224	227	parallel
Strand 4	G	247	250	parallel
Strand 5	G	275	281	parallel
Strand 6	G	297	300	parallel
Strand 7	G	338	341	parallel
Strand 8	G	360	363	parallel
Strand 9	G	46	48	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	380	first strand
Strand 2	G	383	389	anti-parallel
Strand 3	G	419	423	anti-parallel
Strand 4	H	477	478	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	37	first strand
Strand 2	H	40	42	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	48	first strand
Strand 2	H	69	72	parallel
Strand 3	H	224	227	parallel
Strand 4	H	247	251	parallel
Strand 5	H	275	281	parallel
Strand 6	H	297	300	parallel
Strand 7	H	338	341	parallel
Strand 8	H	360	363	parallel
Strand 9	H	46	48	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UUZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UUZ