Analysis of interatomic Contacts of Structural Units in PDB entry:
5UV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UV8 entry

There are 4 chains in PDB entry 5UV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	CYS 293
B	ASN 15	ALA 121
G	PRO 25	ASP 294
I	TYR 13	ALA 121

There are 18 helices in PDB entry 5UV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	169	175	Right-handed alpha
Helix 2	AA2	A	203	206	Right-handed 310
Helix 3	AA3	B	16	28	Right-handed alpha
Helix 4	AA4	B	35	40	Right-handed 310
Helix 5	AA5	B	41	50	Right-handed alpha
Helix 6	AA6	B	53	67	Right-handed alpha
Helix 7	AA7	B	71	79	Right-handed alpha
Helix 8	AA8	B	80	85	Right-handed 310
Helix 9	AA9	B	103	121	Right-handed alpha
Helix 10	AB1	G	169	174	Right-handed alpha
Helix 11	AB2	G	203	206	Right-handed 310
Helix 12	AB3	I	15	29	Right-handed alpha
Helix 13	AB4	I	36	40	Right-handed 310
Helix 14	AB5	I	41	50	Right-handed alpha
Helix 15	AB6	I	53	67	Right-handed alpha
Helix 16	AB7	I	71	79	Right-handed alpha
Helix 17	AB8	I	80	85	Right-handed 310
Helix 18	AB9	I	103	121	Right-handed alpha

There are 12 sheets in PDB entry 5UV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	38	40	anti-parallel
Strand 3	A	67	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	79	85	anti-parallel
Strand 4	A	90	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	119	125	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	153	156	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	135	142	anti-parallel
Strand 3	A	179	187	anti-parallel
Strand 4	A	196	201	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	217	first strand
Strand 2	A	221	227	anti-parallel
Strand 3	A	259	263	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	255	first strand
Strand 2	A	236	244	anti-parallel
Strand 3	A	267	276	anti-parallel
Strand 4	A	289	292	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	38	40	anti-parallel
Strand 3	G	67	69	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	50	54	anti-parallel
Strand 3	G	79	85	anti-parallel
Strand 4	G	90	96	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	115	first strand
Strand 2	G	119	125	anti-parallel
Strand 3	G	162	167	anti-parallel
Strand 4	G	155	156	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	150	first strand
Strand 2	G	135	141	anti-parallel
Strand 3	G	179	187	anti-parallel
Strand 4	G	196	201	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	217	first strand
Strand 2	G	221	227	anti-parallel
Strand 3	G	259	263	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	255	first strand
Strand 2	G	236	244	anti-parallel
Strand 3	G	267	276	anti-parallel
Strand 4	G	289	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UV8