Analysis of interatomic Contacts of Structural Units in PDB entry:
5UVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UVN entry

There are 6 chains in PDB entry 5UVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 42	UNK 2005
B	GLY 42	UNK 2005
C	GLY 42	UNK 2005
D	GLY 42	UNK 2005
E	GLY 42	UNK 2005
F	GLY 42	UNK 2005

There are 60 helices in PDB entry 5UVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	98	Right-handed 310
Helix 2	AA2	A	120	125	Right-handed alpha
Helix 3	AA3	A	208	212	Right-handed 310
Helix 4	AA4	A	238	245	Right-handed alpha
Helix 5	AA5	A	273	281	Right-handed alpha
Helix 6	AA6	A	322	333	Right-handed alpha
Helix 7	AA7	A	343	346	Right-handed 310
Helix 8	AA8	A	356	365	Right-handed alpha
Helix 9	AA9	A	412	430	Right-handed alpha
Helix 10	AB1	A	436	467	Right-handed alpha
Helix 11	AB2	B	92	98	Right-handed 310
Helix 12	AB3	B	120	125	Right-handed alpha
Helix 13	AB4	B	208	212	Right-handed 310
Helix 14	AB5	B	238	245	Right-handed alpha
Helix 15	AB6	B	273	281	Right-handed alpha
Helix 16	AB7	B	322	333	Right-handed alpha
Helix 17	AB8	B	343	346	Right-handed 310
Helix 18	AB9	B	356	365	Right-handed alpha
Helix 19	AC1	B	412	430	Right-handed alpha
Helix 20	AC2	B	436	467	Right-handed alpha
Helix 21	AC3	C	92	98	Right-handed 310
Helix 22	AC4	C	120	125	Right-handed alpha
Helix 23	AC5	C	208	212	Right-handed 310
Helix 24	AC6	C	238	245	Right-handed alpha
Helix 25	AC7	C	273	281	Right-handed alpha
Helix 26	AC8	C	322	333	Right-handed alpha
Helix 27	AC9	C	343	346	Right-handed 310
Helix 28	AD1	C	356	365	Right-handed alpha
Helix 29	AD2	C	412	430	Right-handed alpha
Helix 30	AD3	C	436	467	Right-handed alpha
Helix 31	AD4	D	92	98	Right-handed 310
Helix 32	AD5	D	120	125	Right-handed alpha
Helix 33	AD6	D	208	212	Right-handed 310
Helix 34	AD7	D	238	245	Right-handed alpha
Helix 35	AD8	D	273	281	Right-handed alpha
Helix 36	AD9	D	322	333	Right-handed alpha
Helix 37	AE1	D	343	346	Right-handed 310
Helix 38	AE2	D	356	365	Right-handed alpha
Helix 39	AE3	D	412	430	Right-handed alpha
Helix 40	AE4	D	436	467	Right-handed alpha
Helix 41	AE5	E	92	98	Right-handed 310
Helix 42	AE6	E	120	125	Right-handed alpha
Helix 43	AE7	E	208	212	Right-handed 310
Helix 44	AE8	E	238	245	Right-handed alpha
Helix 45	AE9	E	273	281	Right-handed alpha
Helix 46	AF1	E	322	333	Right-handed alpha
Helix 47	AF2	E	343	346	Right-handed 310
Helix 48	AF3	E	356	365	Right-handed alpha
Helix 49	AF4	E	412	430	Right-handed alpha
Helix 50	AF5	E	436	467	Right-handed alpha
Helix 51	AF6	F	92	98	Right-handed 310
Helix 52	AF7	F	120	125	Right-handed alpha
Helix 53	AF8	F	208	212	Right-handed 310
Helix 54	AF9	F	238	245	Right-handed alpha
Helix 55	AG1	F	273	281	Right-handed alpha
Helix 56	AG2	F	322	333	Right-handed alpha
Helix 57	AG3	F	343	346	Right-handed 310
Helix 58	AG4	F	356	365	Right-handed alpha
Helix 59	AG5	F	412	430	Right-handed alpha
Helix 60	AG6	F	436	467	Right-handed alpha

There are 30 sheets in PDB entry 5UVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	84	90	anti-parallel
Strand 3	A	67	77	anti-parallel
Strand 4	A	61	64	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	144	146	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	175	178	parallel
Strand 4	A	181	191	anti-parallel
Strand 5	A	198	204	anti-parallel
Strand 6	A	158	163	anti-parallel
Strand 7	A	267	269	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	B	1003	1006	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	374	first strand
Strand 2	A	382	386	anti-parallel
Strand 3	A	304	307	parallel
Strand 4	A	310	315	anti-parallel
Strand 5	A	335	341	anti-parallel
Strand 6	A	286	292	anti-parallel
Strand 7	A	406	407	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1006	first strand
Strand 2	F	224	227	anti-parallel
Strand 3	F	234	236	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	49	first strand
Strand 2	B	84	90	anti-parallel
Strand 3	B	67	77	anti-parallel
Strand 4	B	61	64	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	103	106	anti-parallel
Strand 3	B	144	146	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	221	first strand
Strand 2	B	247	251	anti-parallel
Strand 3	B	175	178	parallel
Strand 4	B	181	191	anti-parallel
Strand 5	B	198	204	anti-parallel
Strand 6	B	158	163	anti-parallel
Strand 7	B	267	269	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	224	227	anti-parallel
Strand 3	C	1003	1006	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	374	first strand
Strand 2	B	382	386	anti-parallel
Strand 3	B	304	307	parallel
Strand 4	B	310	315	anti-parallel
Strand 5	B	335	341	anti-parallel
Strand 6	B	286	292	anti-parallel
Strand 7	B	406	407	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	84	90	anti-parallel
Strand 3	C	67	77	anti-parallel
Strand 4	C	61	64	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	144	146	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	175	178	parallel
Strand 4	C	181	191	anti-parallel
Strand 5	C	198	204	anti-parallel
Strand 6	C	158	163	anti-parallel
Strand 7	C	267	269	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	224	227	anti-parallel
Strand 3	D	1003	1006	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	374	first strand
Strand 2	C	382	386	anti-parallel
Strand 3	C	304	307	parallel
Strand 4	C	310	315	anti-parallel
Strand 5	C	335	341	anti-parallel
Strand 6	C	286	292	anti-parallel
Strand 7	C	406	407	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	49	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	67	77	anti-parallel
Strand 4	D	61	64	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	103	106	anti-parallel
Strand 3	D	144	146	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	221	first strand
Strand 2	D	247	251	anti-parallel
Strand 3	D	175	178	parallel
Strand 4	D	181	191	anti-parallel
Strand 5	D	198	204	anti-parallel
Strand 6	D	158	163	anti-parallel
Strand 7	D	267	269	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	224	227	anti-parallel
Strand 3	E	1003	1006	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	374	first strand
Strand 2	D	382	386	anti-parallel
Strand 3	D	304	307	parallel
Strand 4	D	310	315	anti-parallel
Strand 5	D	335	341	anti-parallel
Strand 6	D	286	292	anti-parallel
Strand 7	D	406	407	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	49	first strand
Strand 2	E	84	90	anti-parallel
Strand 3	E	67	77	anti-parallel
Strand 4	E	61	64	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	103	106	anti-parallel
Strand 3	E	144	146	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	221	first strand
Strand 2	E	247	251	anti-parallel
Strand 3	E	175	178	parallel
Strand 4	E	181	191	anti-parallel
Strand 5	E	198	204	anti-parallel
Strand 6	E	158	163	anti-parallel
Strand 7	E	267	269	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	236	first strand
Strand 2	E	224	227	anti-parallel
Strand 3	F	1003	1006	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	374	first strand
Strand 2	E	382	386	anti-parallel
Strand 3	E	304	307	parallel
Strand 4	E	310	315	anti-parallel
Strand 5	E	335	341	anti-parallel
Strand 6	E	286	292	anti-parallel
Strand 7	E	406	407	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	49	first strand
Strand 2	F	84	90	anti-parallel
Strand 3	F	67	77	anti-parallel
Strand 4	F	61	64	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	131	first strand
Strand 2	F	103	106	anti-parallel
Strand 3	F	144	146	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	221	first strand
Strand 2	F	247	251	anti-parallel
Strand 3	F	175	178	parallel
Strand 4	F	181	191	anti-parallel
Strand 5	F	198	204	anti-parallel
Strand 6	F	158	163	anti-parallel
Strand 7	F	267	269	parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	374	first strand
Strand 2	F	382	386	anti-parallel
Strand 3	F	304	307	parallel
Strand 4	F	310	315	anti-parallel
Strand 5	F	335	341	anti-parallel
Strand 6	F	286	292	anti-parallel
Strand 7	F	406	407	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UVN