Analysis of interatomic Contacts of Structural Units in PDB entry:
5UW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UW0 entry

There are 2 chains in PDB entry 5UW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 639
B	SER 2	TYR 618

There are124 helices in PDB entry 5UW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	73	86	Right-handed alpha
Helix 4	AA4	A	108	113	Right-handed 310
Helix 5	AA5	A	114	127	Right-handed alpha
Helix 6	AA6	A	134	158	Right-handed alpha
Helix 7	AA7	A	170	173	Right-handed 310
Helix 8	AA8	A	174	182	Right-handed alpha
Helix 9	AA9	A	195	204	Right-handed alpha
Helix 10	AB1	A	217	225	Right-handed alpha
Helix 11	AB2	A	227	241	Right-handed alpha
Helix 12	AB3	A	248	259	Right-handed alpha
Helix 13	AB4	A	280	301	Right-handed alpha
Helix 14	AB5	A	308	310	Right-handed 310
Helix 15	AB6	A	327	346	Right-handed alpha
Helix 16	AB7	A	365	400	Right-handed alpha
Helix 17	AB8	A	412	416	Right-handed 310
Helix 18	AB9	A	418	433	Right-handed alpha
Helix 19	AC1	A	449	452	Right-handed 310
Helix 20	AC2	A	453	463	Right-handed alpha
Helix 21	AC3	A	491	499	Right-handed alpha
Helix 22	AC4	A	512	521	Right-handed alpha
Helix 23	AC5	A	531	541	Right-handed alpha
Helix 24	AC6	A	560	577	Right-handed alpha
Helix 25	AC7	A	579	594	Right-handed alpha
Helix 26	AC8	A	595	597	Right-handed 310
Helix 27	AC9	A	598	618	Right-handed alpha
Helix 28	AD1	A	618	627	Right-handed alpha
Helix 29	AD2	A	634	639	Right-handed alpha
Helix 30	AD3	B	22	31	Right-handed alpha
Helix 31	AD4	B	31	40	Right-handed alpha
Helix 32	AD5	B	53	57	Right-handed alpha
Helix 33	AD6	B	65	69	Right-handed 310
Helix 34	AD7	B	73	86	Right-handed alpha
Helix 35	AD8	B	108	113	Right-handed 310
Helix 36	AD9	B	114	127	Right-handed alpha
Helix 37	AE1	B	134	158	Right-handed alpha
Helix 38	AE2	B	170	173	Right-handed 310
Helix 39	AE3	B	174	182	Right-handed alpha
Helix 40	AE4	B	195	202	Right-handed alpha
Helix 41	AE5	B	208	213	Right-handed alpha
Helix 42	AE6	B	214	216	Right-handed 310
Helix 43	AE7	B	217	225	Right-handed alpha
Helix 44	AE8	B	227	241	Right-handed alpha
Helix 45	AE9	B	248	260	Right-handed alpha
Helix 46	AF1	B	280	301	Right-handed alpha
Helix 47	AF2	B	308	310	Right-handed 310
Helix 48	AF3	B	327	345	Right-handed alpha
Helix 49	AF4	B	365	400	Right-handed alpha
Helix 50	AF5	B	412	417	Right-handed alpha
Helix 51	AF6	B	418	432	Right-handed alpha
Helix 52	AF7	B	449	452	Right-handed 310
Helix 53	AF8	B	453	463	Right-handed alpha
Helix 54	AF9	B	491	499	Right-handed alpha
Helix 55	AG1	B	512	521	Right-handed alpha
Helix 56	AG2	B	531	541	Right-handed alpha
Helix 57	AG3	B	542	547	Right-handed alpha
Helix 58	AG4	B	560	578	Right-handed alpha
Helix 59	AG5	B	579	594	Right-handed alpha
Helix 60	AG6	B	598	618	Right-handed alpha
Helix 61	AG7	B	618	625	Right-handed alpha
Helix 62	AG8	B	634	639	Right-handed alpha
Helix 63	AG9	C	22	31	Right-handed alpha
Helix 64	AH1	C	31	40	Right-handed alpha
Helix 65	AH2	C	53	57	Right-handed alpha
Helix 66	AH3	C	65	69	Right-handed 310
Helix 67	AH4	C	73	85	Right-handed alpha
Helix 68	AH5	C	108	113	Right-handed 310
Helix 69	AH6	C	114	125	Right-handed alpha
Helix 70	AH7	C	134	158	Right-handed alpha
Helix 71	AH8	C	169	173	Right-handed alpha
Helix 72	AH9	C	174	182	Right-handed alpha
Helix 73	AI1	C	195	204	Right-handed alpha
Helix 74	AI2	C	217	225	Right-handed alpha
Helix 75	AI3	C	227	241	Right-handed alpha
Helix 76	AI4	C	248	260	Right-handed alpha
Helix 77	AI5	C	280	301	Right-handed alpha
Helix 78	AI6	C	308	310	Right-handed 310
Helix 79	AI7	C	327	345	Right-handed alpha
Helix 80	AI8	C	365	400	Right-handed alpha
Helix 81	AI9	C	412	416	Right-handed 310
Helix 82	AJ1	C	418	433	Right-handed alpha
Helix 83	AJ2	C	449	452	Right-handed 310
Helix 84	AJ3	C	453	463	Right-handed alpha
Helix 85	AJ4	C	491	499	Right-handed alpha
Helix 86	AJ5	C	512	521	Right-handed alpha
Helix 87	AJ6	C	531	541	Right-handed alpha
Helix 88	AJ7	C	544	549	Right-handed alpha
Helix 89	AJ8	C	560	577	Right-handed alpha
Helix 90	AJ9	C	579	593	Right-handed alpha
Helix 91	AK1	C	594	597	Right-handed 310
Helix 92	AK2	C	598	618	Right-handed alpha
Helix 93	AK3	C	618	627	Right-handed alpha
Helix 94	AK4	C	634	639	Right-handed alpha
Helix 95	AK5	D	22	40	Right-handed alpha
Helix 96	AK6	D	53	57	Right-handed alpha
Helix 97	AK7	D	65	69	Right-handed 310
Helix 98	AK8	D	73	85	Right-handed alpha
Helix 99	AK9	D	108	113	Right-handed 310
Helix 100	AL1	D	114	126	Right-handed alpha
Helix 101	AL2	D	134	158	Right-handed alpha
Helix 102	AL3	D	170	173	Right-handed 310
Helix 103	AL4	D	174	182	Right-handed alpha
Helix 104	AL5	D	195	202	Right-handed alpha
Helix 105	AL6	D	212	216	Right-handed 310
Helix 106	AL7	D	217	226	Right-handed alpha
Helix 107	AL8	D	227	241	Right-handed alpha
Helix 108	AL9	D	248	260	Right-handed alpha
Helix 109	AM1	D	280	301	Right-handed alpha
Helix 110	AM2	D	308	310	Right-handed 310
Helix 111	AM3	D	327	345	Right-handed alpha
Helix 112	AM4	D	365	400	Right-handed alpha
Helix 113	AM5	D	412	417	Right-handed alpha
Helix 114	AM6	D	418	433	Right-handed alpha
Helix 115	AM7	D	453	462	Right-handed alpha
Helix 116	AM8	D	491	499	Right-handed alpha
Helix 117	AM9	D	512	521	Right-handed alpha
Helix 118	AN1	D	531	541	Right-handed alpha
Helix 119	AN2	D	542	547	Right-handed alpha
Helix 120	AN3	D	560	577	Right-handed alpha
Helix 121	AN4	D	579	598	Right-handed alpha
Helix 122	AN5	D	598	618	Right-handed alpha
Helix 123	AN6	D	618	627	Right-handed alpha
Helix 124	AN7	D	634	638	Right-handed 310

There are 12 sheets in PDB entry 5UW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	102	106	anti-parallel
Strand 4	A	43	48	parallel
Strand 5	A	4	13	parallel
Strand 6	A	161	168	parallel
Strand 7	A	187	192	parallel
Strand 8	A	243	246	parallel
Strand 9	A	265	266	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	350	356	parallel
Strand 3	A	312	318	parallel
Strand 4	A	501	503	parallel
Strand 5	A	525	528	parallel
Strand 6	A	551	554	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	445	447	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	102	106	anti-parallel
Strand 4	B	43	48	parallel
Strand 5	B	4	14	parallel
Strand 6	B	161	168	parallel
Strand 7	B	187	192	parallel
Strand 8	B	243	246	parallel
Strand 9	B	265	266	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	477	first strand
Strand 2	B	350	356	parallel
Strand 3	B	312	318	parallel
Strand 4	B	501	503	parallel
Strand 5	B	525	528	parallel
Strand 6	B	551	554	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	445	447	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	102	106	anti-parallel
Strand 4	C	43	48	parallel
Strand 5	C	4	13	parallel
Strand 6	C	161	168	parallel
Strand 7	C	187	191	parallel
Strand 8	C	243	245	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	477	first strand
Strand 2	C	350	356	parallel
Strand 3	C	312	318	parallel
Strand 4	C	501	503	parallel
Strand 5	C	525	528	parallel
Strand 6	C	551	554	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	364	first strand
Strand 2	C	445	447	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	102	106	anti-parallel
Strand 4	D	43	48	parallel
Strand 5	D	4	14	parallel
Strand 6	D	161	168	parallel
Strand 7	D	187	192	parallel
Strand 8	D	243	246	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	476	first strand
Strand 2	D	350	356	parallel
Strand 3	D	312	318	parallel
Strand 4	D	501	503	parallel
Strand 5	D	525	528	parallel
Strand 6	D	551	554	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	364	first strand
Strand 2	D	445	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UW0