Analysis of interatomic Contacts of Structural Units in PDB entry:
5UW4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UW4 entry

There are 4 chains in PDB entry 5UW4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 2	ALA 639
B	SER 2	ALA 639
A	SER 2	ALA 639
D	SER 2	ALA 639

There are114 helices in PDB entry 5UW4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	22	40	Right-handed alpha
Helix 2	AA2	C	53	56	Right-handed 310
Helix 3	AA3	C	65	69	Right-handed 310
Helix 4	AA4	C	73	87	Right-handed alpha
Helix 5	AA5	C	108	113	Right-handed 310
Helix 6	AA6	C	114	127	Right-handed alpha
Helix 7	AA7	C	134	158	Right-handed alpha
Helix 8	AA8	C	174	182	Right-handed alpha
Helix 9	AA9	C	195	204	Right-handed alpha
Helix 10	AB1	C	217	225	Right-handed alpha
Helix 11	AB2	C	227	241	Right-handed alpha
Helix 12	AB3	C	248	260	Right-handed alpha
Helix 13	AB4	C	280	301	Right-handed alpha
Helix 14	AB5	C	308	310	Right-handed 310
Helix 15	AB6	C	327	345	Right-handed alpha
Helix 16	AB7	C	365	400	Right-handed alpha
Helix 17	AB8	C	412	417	Right-handed alpha
Helix 18	AB9	C	418	433	Right-handed alpha
Helix 19	AC1	C	453	463	Right-handed alpha
Helix 20	AC2	C	491	499	Right-handed alpha
Helix 21	AC3	C	512	521	Right-handed alpha
Helix 22	AC4	C	531	541	Right-handed alpha
Helix 23	AC5	C	560	577	Right-handed alpha
Helix 24	AC6	C	579	593	Right-handed alpha
Helix 25	AC7	C	594	597	Right-handed 310
Helix 26	AC8	C	598	618	Right-handed alpha
Helix 27	AC9	C	618	627	Right-handed alpha
Helix 28	AD1	C	634	639	Right-handed alpha
Helix 29	AD2	B	22	40	Right-handed alpha
Helix 30	AD3	B	53	56	Right-handed 310
Helix 31	AD4	B	65	69	Right-handed 310
Helix 32	AD5	B	73	86	Right-handed alpha
Helix 33	AD6	B	114	126	Right-handed alpha
Helix 34	AD7	B	134	156	Right-handed alpha
Helix 35	AD8	B	174	182	Right-handed alpha
Helix 36	AD9	B	195	202	Right-handed alpha
Helix 37	AE1	B	209	213	Right-handed alpha
Helix 38	AE2	B	214	216	Right-handed 310
Helix 39	AE3	B	217	225	Right-handed alpha
Helix 40	AE4	B	227	241	Right-handed alpha
Helix 41	AE5	B	248	260	Right-handed alpha
Helix 42	AE6	B	280	301	Right-handed alpha
Helix 43	AE7	B	308	310	Right-handed 310
Helix 44	AE8	B	327	345	Right-handed alpha
Helix 45	AE9	B	365	398	Right-handed alpha
Helix 46	AF1	B	418	433	Right-handed alpha
Helix 47	AF2	B	449	452	Right-handed 310
Helix 48	AF3	B	453	462	Right-handed alpha
Helix 49	AF4	B	491	499	Right-handed alpha
Helix 50	AF5	B	512	521	Right-handed alpha
Helix 51	AF6	B	531	541	Right-handed alpha
Helix 52	AF7	B	542	547	Right-handed alpha
Helix 53	AF8	B	560	578	Right-handed alpha
Helix 54	AF9	B	579	594	Right-handed alpha
Helix 55	AG1	B	598	618	Right-handed alpha
Helix 56	AG2	B	618	627	Right-handed alpha
Helix 57	AG3	A	23	40	Right-handed alpha
Helix 58	AG4	A	70	73	Right-handed 310
Helix 59	AG5	A	74	85	Right-handed alpha
Helix 60	AG6	A	108	113	Right-handed 310
Helix 61	AG7	A	114	127	Right-handed alpha
Helix 62	AG8	A	134	158	Right-handed alpha
Helix 63	AG9	A	174	182	Right-handed alpha
Helix 64	AH1	A	195	204	Right-handed alpha
Helix 65	AH2	A	217	225	Right-handed alpha
Helix 66	AH3	A	227	241	Right-handed alpha
Helix 67	AH4	A	248	259	Right-handed alpha
Helix 68	AH5	A	280	301	Right-handed alpha
Helix 69	AH6	A	308	310	Right-handed 310
Helix 70	AH7	A	327	346	Right-handed alpha
Helix 71	AH8	A	365	400	Right-handed alpha
Helix 72	AH9	A	412	416	Right-handed 310
Helix 73	AI1	A	418	433	Right-handed alpha
Helix 74	AI2	A	453	463	Right-handed alpha
Helix 75	AI3	A	491	499	Right-handed alpha
Helix 76	AI4	A	512	521	Right-handed alpha
Helix 77	AI5	A	531	541	Right-handed alpha
Helix 78	AI6	A	544	549	Right-handed alpha
Helix 79	AI7	A	560	578	Right-handed alpha
Helix 80	AI8	A	579	593	Right-handed alpha
Helix 81	AI9	A	594	597	Right-handed 310
Helix 82	AJ1	A	598	618	Right-handed alpha
Helix 83	AJ2	A	618	627	Right-handed alpha
Helix 84	AJ3	A	634	639	Right-handed alpha
Helix 85	AJ4	D	22	37	Right-handed alpha
Helix 86	AJ5	D	53	57	Right-handed alpha
Helix 87	AJ6	D	65	69	Right-handed 310
Helix 88	AJ7	D	74	85	Right-handed alpha
Helix 89	AJ8	D	111	113	Right-handed 310
Helix 90	AJ9	D	114	126	Right-handed alpha
Helix 91	AK1	D	134	156	Right-handed alpha
Helix 92	AK2	D	170	173	Right-handed 310
Helix 93	AK3	D	174	182	Right-handed alpha
Helix 94	AK4	D	195	202	Right-handed alpha
Helix 95	AK5	D	217	226	Right-handed alpha
Helix 96	AK6	D	227	241	Right-handed alpha
Helix 97	AK7	D	248	260	Right-handed alpha
Helix 98	AK8	D	280	301	Right-handed alpha
Helix 99	AK9	D	308	310	Right-handed 310
Helix 100	AL1	D	327	345	Right-handed alpha
Helix 101	AL2	D	365	400	Right-handed alpha
Helix 102	AL3	D	412	417	Right-handed alpha
Helix 103	AL4	D	418	433	Right-handed alpha
Helix 104	AL5	D	453	462	Right-handed alpha
Helix 105	AL6	D	491	499	Right-handed alpha
Helix 106	AL7	D	512	521	Right-handed alpha
Helix 107	AL8	D	531	539	Right-handed alpha
Helix 108	AL9	D	542	547	Right-handed alpha
Helix 109	AM1	D	560	578	Right-handed alpha
Helix 110	AM2	D	579	594	Right-handed alpha
Helix 111	AM3	D	598	603	Right-handed alpha
Helix 112	AM4	D	603	618	Right-handed alpha
Helix 113	AM5	D	618	627	Right-handed alpha
Helix 114	AM6	D	634	638	Right-handed 310

There are 14 sheets in PDB entry 5UW4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	102	106	anti-parallel
Strand 4	C	43	48	parallel
Strand 5	C	4	13	parallel
Strand 6	C	161	168	parallel
Strand 7	C	187	192	parallel
Strand 8	C	243	246	parallel
Strand 9	C	265	266	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	350	356	parallel
Strand 3	C	472	476	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	350	356	parallel
Strand 3	C	315	318	parallel
Strand 4	C	501	503	parallel
Strand 5	C	525	528	parallel
Strand 6	C	551	554	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	364	first strand
Strand 2	C	445	447	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	102	106	anti-parallel
Strand 4	B	43	48	parallel
Strand 5	B	4	14	parallel
Strand 6	B	161	168	parallel
Strand 7	B	187	192	parallel
Strand 8	B	243	246	parallel
Strand 9	B	265	266	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	476	first strand
Strand 2	B	350	356	parallel
Strand 3	B	312	318	parallel
Strand 4	B	501	503	parallel
Strand 5	B	525	528	parallel
Strand 6	B	551	554	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	445	447	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	43	48	parallel
Strand 4	A	4	14	parallel
Strand 5	A	161	168	parallel
Strand 6	A	187	192	parallel
Strand 7	A	243	246	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	94	95	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	350	356	parallel
Strand 3	A	312	318	parallel
Strand 4	A	501	503	parallel
Strand 5	A	525	528	parallel
Strand 6	A	551	554	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	445	447	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	102	106	anti-parallel
Strand 4	D	43	46	parallel
Strand 5	D	4	14	parallel
Strand 6	D	161	168	parallel
Strand 7	D	187	192	parallel
Strand 8	D	243	246	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	476	first strand
Strand 2	D	350	356	parallel
Strand 3	D	312	318	parallel
Strand 4	D	501	503	parallel
Strand 5	D	525	528	parallel
Strand 6	D	551	554	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	364	first strand
Strand 2	D	445	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UW4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UW4