Analysis of interatomic Contacts of Structural Units in PDB entry:
5UWX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UWX entry

There are 4 chains in PDB entry 5UWX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	SER 481
B	ALA 2	VAL 482
C	SER -2	VAL 482
D	ALA 2	ASN 448

There are 59 helices in PDB entry 5UWX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	12	Right-handed 310
Helix 2	AA2	A	24	28	Right-handed 310
Helix 3	AA3	A	54	64	Right-handed alpha
Helix 4	AA4	A	75	88	Right-handed alpha
Helix 5	AA5	A	227	238	Right-handed alpha
Helix 6	AA6	A	252	266	Right-handed alpha
Helix 7	AA7	A	278	289	Right-handed alpha
Helix 8	AA8	A	304	310	Right-handed alpha
Helix 9	AA9	A	314	330	Right-handed alpha
Helix 10	AB1	A	341	351	Right-handed alpha
Helix 11	AB2	A	359	364	Right-handed alpha
Helix 12	AB3	A	388	393	Right-handed alpha
Helix 13	AB4	A	422	442	Right-handed alpha
Helix 14	AB5	A	445	453	Right-handed alpha
Helix 15	AB6	A	459	467	Right-handed alpha
Helix 16	AB7	B	10	12	Right-handed 310
Helix 17	AB8	B	24	28	Right-handed 310
Helix 18	AB9	B	54	65	Right-handed alpha
Helix 19	AC1	B	75	89	Right-handed alpha
Helix 20	AC2	B	227	238	Right-handed alpha
Helix 21	AC3	B	252	266	Right-handed alpha
Helix 22	AC4	B	278	289	Right-handed alpha
Helix 23	AC5	B	304	310	Right-handed alpha
Helix 24	AC6	B	314	330	Right-handed alpha
Helix 25	AC7	B	341	351	Right-handed alpha
Helix 26	AC8	B	359	364	Right-handed alpha
Helix 27	AC9	B	388	394	Right-handed alpha
Helix 28	AD1	B	422	441	Right-handed alpha
Helix 29	AD2	B	445	452	Right-handed alpha
Helix 30	AD3	B	459	467	Right-handed alpha
Helix 31	AD4	C	10	12	Right-handed 310
Helix 32	AD5	C	24	28	Right-handed 310
Helix 33	AD6	C	54	64	Right-handed alpha
Helix 34	AD7	C	75	88	Right-handed alpha
Helix 35	AD8	C	227	238	Right-handed alpha
Helix 36	AD9	C	252	266	Right-handed alpha
Helix 37	AE1	C	278	289	Right-handed alpha
Helix 38	AE2	C	304	309	Right-handed alpha
Helix 39	AE3	C	314	330	Right-handed alpha
Helix 40	AE4	C	341	351	Right-handed alpha
Helix 41	AE5	C	359	364	Right-handed alpha
Helix 42	AE6	C	422	441	Right-handed alpha
Helix 43	AE7	C	445	453	Right-handed alpha
Helix 44	AE8	C	459	467	Right-handed alpha
Helix 45	AE9	D	10	12	Right-handed 310
Helix 46	AF1	D	24	28	Right-handed 310
Helix 47	AF2	D	54	64	Right-handed alpha
Helix 48	AF3	D	75	89	Right-handed alpha
Helix 49	AF4	D	227	238	Right-handed alpha
Helix 50	AF5	D	252	266	Right-handed alpha
Helix 51	AF6	D	278	289	Right-handed alpha
Helix 52	AF7	D	304	309	Right-handed alpha
Helix 53	AF8	D	314	330	Right-handed alpha
Helix 54	AF9	D	341	351	Right-handed alpha
Helix 55	AG1	D	359	364	Right-handed alpha
Helix 56	AG2	D	388	393	Right-handed alpha
Helix 57	AG3	D	422	442	Right-handed alpha
Helix 58	AG4	D	445	452	Right-handed alpha
Helix 59	AG5	D	459	467	Right-handed alpha

There are 16 sheets in PDB entry 5UWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	B	455	458	parallel
Strand 3	B	14	16	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	455	457	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	39	40	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	67	70	parallel
Strand 3	A	219	222	parallel
Strand 4	A	242	246	parallel
Strand 5	A	270	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	333	336	parallel
Strand 8	A	355	358	parallel
Strand 9	A	44	46	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	375	first strand
Strand 2	A	378	384	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	B	472	473	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	39	40	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	67	70	parallel
Strand 3	B	219	222	parallel
Strand 4	B	242	246	parallel
Strand 5	B	270	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	333	336	parallel
Strand 8	B	355	358	parallel
Strand 9	B	44	46	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	378	384	anti-parallel
Strand 3	B	414	418	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	455	457	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	39	40	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	67	70	parallel
Strand 3	C	219	222	parallel
Strand 4	C	242	246	parallel
Strand 5	C	270	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	333	336	parallel
Strand 8	C	355	358	parallel
Strand 9	C	44	46	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	378	384	anti-parallel
Strand 3	C	414	418	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	455	457	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	39	40	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	67	70	parallel
Strand 3	D	219	222	parallel
Strand 4	D	242	246	parallel
Strand 5	D	270	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	333	336	parallel
Strand 8	D	355	358	parallel
Strand 9	D	44	46	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	375	first strand
Strand 2	D	378	384	anti-parallel
Strand 3	D	414	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UWX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UWX