Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UX0 entry

There are 4 chains in PDB entry 5UX0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 0	TYR 639
B	G 1	U 20
C	A 2	C 21
D	ALA 1	ASN 457

There are 48 helices in PDB entry 5UX0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	38	Right-handed alpha
Helix 2	AA2	A	61	66	Right-handed 310
Helix 3	AA3	A	80	99	Right-handed alpha
Helix 4	AA4	A	156	160	Right-handed 310
Helix 5	AA5	A	181	185	Right-handed 310
Helix 6	AA6	A	209	216	Right-handed alpha
Helix 7	AA7	A	218	229	Right-handed alpha
Helix 8	AA8	A	229	236	Right-handed alpha
Helix 9	AA9	A	236	241	Right-handed alpha
Helix 10	AB1	A	242	247	Right-handed 310
Helix 11	AB2	A	280	285	Right-handed alpha
Helix 12	AB3	A	301	317	Right-handed alpha
Helix 13	AB4	A	321	330	Right-handed alpha
Helix 14	AB5	A	360	365	Right-handed alpha
Helix 15	AB6	A	383	390	Right-handed alpha
Helix 16	AB7	A	408	423	Right-handed alpha
Helix 17	AB8	A	434	438	Right-handed 310
Helix 18	AB9	A	483	505	Right-handed alpha
Helix 19	AC1	A	522	532	Right-handed alpha
Helix 20	AC2	A	591	603	Right-handed alpha
Helix 21	AC3	A	617	629	Right-handed alpha
Helix 22	AC4	A	632	637	Right-handed alpha
Helix 23	AC5	D	25	38	Right-handed alpha
Helix 24	AC6	D	61	66	Right-handed 310
Helix 25	AC7	D	80	99	Right-handed alpha
Helix 26	AC8	D	181	185	Right-handed 310
Helix 27	AC9	D	191	193	Right-handed 310
Helix 28	AD1	D	200	202	Right-handed 310
Helix 29	AD2	D	209	216	Right-handed alpha
Helix 30	AD3	D	218	229	Right-handed alpha
Helix 31	AD4	D	229	236	Right-handed alpha
Helix 32	AD5	D	236	241	Right-handed alpha
Helix 33	AD6	D	242	247	Right-handed 310
Helix 34	AD7	D	280	285	Right-handed alpha
Helix 35	AD8	D	301	317	Right-handed alpha
Helix 36	AD9	D	321	330	Right-handed alpha
Helix 37	AE1	D	360	365	Right-handed alpha
Helix 38	AE2	D	383	390	Right-handed alpha
Helix 39	AE3	D	401	406	Right-handed alpha
Helix 40	AE4	D	408	423	Right-handed alpha
Helix 41	AE5	D	433	438	Right-handed 310
Helix 42	AE6	D	481	484	Right-handed 310
Helix 43	AE7	D	485	505	Right-handed alpha
Helix 44	AE8	D	522	531	Right-handed alpha
Helix 45	AE9	D	532	534	Right-handed 310
Helix 46	AF1	D	591	603	Right-handed alpha
Helix 47	AF2	D	617	629	Right-handed alpha
Helix 48	AF3	D	632	637	Right-handed alpha

There are 15 sheets in PDB entry 5UX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	254	255	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	140	153	anti-parallel
Strand 3	A	124	137	anti-parallel
Strand 4	A	108	117	anti-parallel
Strand 5	A	101	104	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	14	19	anti-parallel
Strand 4	A	68	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	187	190	anti-parallel
Strand 3	A	175	180	anti-parallel
Strand 4	A	166	169	anti-parallel
Strand 5	A	204	206	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	557	560	anti-parallel
Strand 3	A	565	569	anti-parallel
Strand 4	A	579	586	anti-parallel
Strand 5	A	536	543	anti-parallel
Strand 6	A	510	516	parallel
Strand 7	A	440	449	parallel
Strand 8	A	456	463	anti-parallel
Strand 9	A	469	475	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	268	270	anti-parallel
Strand 3	A	430	431	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	292	299	parallel
Strand 3	A	347	349	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	292	299	parallel
Strand 3	A	371	376	parallel
Strand 4	A	395	400	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	140	153	anti-parallel
Strand 3	D	124	137	anti-parallel
Strand 4	D	108	117	anti-parallel
Strand 5	D	101	104	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	13	19	anti-parallel
Strand 4	D	68	76	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	187	190	anti-parallel
Strand 3	D	175	180	anti-parallel
Strand 4	D	166	169	anti-parallel
Strand 5	D	204	206	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	263	first strand
Strand 2	D	557	560	anti-parallel
Strand 3	D	565	569	anti-parallel
Strand 4	D	579	586	anti-parallel
Strand 5	D	536	543	anti-parallel
Strand 6	D	510	516	parallel
Strand 7	D	440	449	parallel
Strand 8	D	455	463	anti-parallel
Strand 9	D	469	479	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	275	first strand
Strand 2	D	268	270	anti-parallel
Strand 3	D	430	431	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	293	299	parallel
Strand 3	D	347	349	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	293	299	parallel
Strand 3	D	371	376	parallel
Strand 4	D	395	400	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UX0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX0