Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UX4 entry

There are 2 chains in PDB entry 5UX4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LEU 343
B	GLU 1	LEU 343

There are 19 helices in PDB entry 5UX4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed 310
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	119	124	Right-handed alpha
Helix 4	AA4	A	134	142	Right-handed 310
Helix 5	AA5	A	144	152	Right-handed alpha
Helix 6	AA6	A	182	186	Right-handed 310
Helix 7	AA7	A	235	246	Right-handed alpha
Helix 8	AA8	A	262	266	Right-handed 310
Helix 9	AA9	A	317	322	Right-handed alpha
Helix 10	AB1	B	50	55	Right-handed 310
Helix 11	AB2	B	60	64	Right-handed 310
Helix 12	AB3	B	119	124	Right-handed alpha
Helix 13	AB4	B	134	142	Right-handed 310
Helix 14	AB5	B	144	152	Right-handed alpha
Helix 15	AB6	B	182	186	Right-handed 310
Helix 16	AB7	B	235	247	Right-handed alpha
Helix 17	AB8	B	259	266	Right-handed 310
Helix 18	AB9	B	281	285	Right-handed alpha
Helix 19	AC1	B	317	322	Right-handed alpha

There are 12 sheets in PDB entry 5UX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	82	94	anti-parallel
Strand 3	A	14	21	anti-parallel
Strand 4	A	3	10	anti-parallel
Strand 5	A	174	178	anti-parallel
Strand 6	A	159	164	anti-parallel
Strand 7	A	324	329	anti-parallel
Strand 8	A	334	339	anti-parallel
Strand 9	A	191	194	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	82	94	anti-parallel
Strand 3	A	103	115	anti-parallel
Strand 4	A	39	42	parallel
Strand 5	A	128	131	anti-parallel
Strand 6	A	26	33	parallel
Strand 7	A	14	21	anti-parallel
Strand 8	A	3	10	anti-parallel
Strand 9	A	174	178	anti-parallel
Strand 10	A	159	164	anti-parallel
Strand 11	A	324	329	anti-parallel
Strand 12	A	334	339	anti-parallel
Strand 13	A	191	194	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	314	316	parallel
Strand 4	A	232	234	anti-parallel
Strand 5	A	301	303	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	207	210	anti-parallel
Strand 3	A	269	273	anti-parallel
Strand 4	A	276	280	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	256	257	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	A	296	299	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	82	94	anti-parallel
Strand 3	B	14	21	anti-parallel
Strand 4	B	3	10	anti-parallel
Strand 5	B	174	178	anti-parallel
Strand 6	B	159	164	anti-parallel
Strand 7	B	324	329	anti-parallel
Strand 8	B	334	339	anti-parallel
Strand 9	B	191	194	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	82	94	anti-parallel
Strand 3	B	103	115	anti-parallel
Strand 4	B	39	42	parallel
Strand 5	B	128	131	anti-parallel
Strand 6	B	26	33	parallel
Strand 7	B	14	21	anti-parallel
Strand 8	B	3	10	anti-parallel
Strand 9	B	174	178	anti-parallel
Strand 10	B	159	164	anti-parallel
Strand 11	B	324	329	anti-parallel
Strand 12	B	334	339	anti-parallel
Strand 13	B	191	194	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	221	225	anti-parallel
Strand 3	B	314	316	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	207	210	anti-parallel
Strand 3	B	269	273	anti-parallel
Strand 4	B	276	280	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	301	303	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	256	258	anti-parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	286	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UX4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX4