Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UX9 entry

There are 4 chains in PDB entry 5UX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLY 217
B	ALA 3	GLY 217
C	ALA 3	GLY 217
D	MSE 1	GLY 217

There are 37 helices in PDB entry 5UX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	36	Right-handed 310
Helix 2	AA2	A	38	43	Right-handed alpha
Helix 3	AA3	A	53	59	Right-handed alpha
Helix 4	AA4	A	173	184	Right-handed alpha
Helix 5	AA5	A	185	188	Right-handed 310
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	196	201	Right-handed alpha
Helix 8	AA8	A	204	216	Right-handed alpha
Helix 9	AA9	B	13	17	Right-handed alpha
Helix 10	AB1	B	32	36	Right-handed 310
Helix 11	AB2	B	38	43	Right-handed alpha
Helix 12	AB3	B	53	59	Right-handed alpha
Helix 13	AB4	B	101	106	Right-handed alpha
Helix 14	AB5	B	173	184	Right-handed alpha
Helix 15	AB6	B	185	188	Right-handed 310
Helix 16	AB7	B	189	196	Right-handed alpha
Helix 17	AB8	B	196	201	Right-handed alpha
Helix 18	AB9	B	204	216	Right-handed alpha
Helix 19	AC1	C	32	36	Right-handed 310
Helix 20	AC2	C	38	43	Right-handed alpha
Helix 21	AC3	C	50	52	Right-handed 310
Helix 22	AC4	C	53	58	Right-handed alpha
Helix 23	AC5	C	101	106	Right-handed alpha
Helix 24	AC6	C	173	184	Right-handed alpha
Helix 25	AC7	C	185	188	Right-handed 310
Helix 26	AC8	C	189	196	Right-handed alpha
Helix 27	AC9	C	196	201	Right-handed alpha
Helix 28	AD1	C	204	215	Right-handed alpha
Helix 29	AD2	D	32	36	Right-handed 310
Helix 30	AD3	D	38	43	Right-handed alpha
Helix 31	AD4	D	50	52	Right-handed 310
Helix 32	AD5	D	53	59	Right-handed alpha
Helix 33	AD6	D	101	106	Right-handed alpha
Helix 34	AD7	D	173	184	Right-handed alpha
Helix 35	AD8	D	185	188	Right-handed 310
Helix 36	AD9	D	189	201	Right-handed alpha
Helix 37	AE1	D	204	216	Right-handed alpha

There are 12 sheets in PDB entry 5UX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	29	30	anti-parallel
Strand 3	A	75	76	parallel
Strand 4	A	126	127	parallel
Strand 5	A	144	145	parallel
Strand 6	A	159	162	parallel
Strand 7	A	166	170	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	68	70	parallel
Strand 3	A	119	121	parallel
Strand 4	A	138	139	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	81	83	parallel
Strand 3	A	132	133	parallel
Strand 4	A	150	151	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	29	31	anti-parallel
Strand 3	B	75	77	parallel
Strand 4	B	126	127	parallel
Strand 5	B	144	145	parallel
Strand 6	B	159	162	parallel
Strand 7	B	166	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	68	70	parallel
Strand 3	B	119	121	parallel
Strand 4	B	138	139	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	81	83	parallel
Strand 3	B	132	133	parallel
Strand 4	B	150	151	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	29	30	anti-parallel
Strand 3	C	75	76	parallel
Strand 4	C	126	127	parallel
Strand 5	C	144	145	parallel
Strand 6	C	159	162	parallel
Strand 7	C	166	170	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	68	70	parallel
Strand 3	C	119	121	parallel
Strand 4	C	138	139	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	81	83	parallel
Strand 3	C	132	133	parallel
Strand 4	C	150	151	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	29	30	anti-parallel
Strand 3	D	75	76	parallel
Strand 4	D	126	127	parallel
Strand 5	D	144	145	parallel
Strand 6	D	159	162	parallel
Strand 7	D	166	170	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	68	70	parallel
Strand 3	D	119	121	parallel
Strand 4	D	138	139	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	81	83	parallel
Strand 3	D	132	133	parallel
Strand 4	D	150	151	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UX9