Analysis of interatomic Contacts of Structural Units in PDB entry:
5UXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UXA entry

There is 1 chain in PDB entry 5UXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5UXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
55 74Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
120 136Right-handed alpha
Helix 6
AA6
A
138 144Right-handed alpha
Helix 7
AA7
A
151 171Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
187 190Right-handed 310
Helix 10
AB1
A
202 204Right-handed 310
Helix 11
AB2
A
227 231Right-handed 310
Helix 12
AB3
A
232 254Right-handed alpha
Helix 13
AB4
A
261 272Right-handed alpha
Helix 14
AB5
A
272 285Right-handed alpha
Helix 15
AB6
A
286 297Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5UXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
206 208anti-parallel
Strand 3
A
214 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
224 226anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il