Analysis of interatomic Contacts of Structural Units in PDB entry:
5UXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UXB entry

There are 2 chains in PDB entry 5UXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ARG 298
B
 PRO 2ARG 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5UXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
53 55Right-handed 310
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
116 132Right-handed alpha
Helix 6
AA6
A
134 140Right-handed alpha
Helix 7
AA7
A
147 166Right-handed alpha
Helix 8
AA8
A
169 182Right-handed alpha
Helix 9
AA9
A
183 186Right-handed 310
Helix 10
AB1
A
198 200Right-handed 310
Helix 11
AB2
A
222 226Right-handed 310
Helix 12
AB3
A
227 234Right-handed alpha
Helix 13
AB4
A
235 249Right-handed alpha
Helix 14
AB5
A
256 267Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
Helix 16
AB7
A
281 293Right-handed alpha
Helix 17
AB8
B
4 15Right-handed alpha
Helix 18
AB9
B
53 55Right-handed 310
Helix 19
AC1
B
56 71Right-handed alpha
Helix 20
AC2
B
72 74Right-handed 310
Helix 21
AC3
B
116 132Right-handed alpha
Helix 22
AC4
B
134 140Right-handed alpha
Helix 23
AC5
B
147 166Right-handed alpha
Helix 24
AC6
B
169 182Right-handed alpha
Helix 25
AC7
B
183 186Right-handed 310
Helix 26
AC8
B
198 200Right-handed 310
Helix 27
AC9
B
222 226Right-handed 310
Helix 28
AD1
B
227 234Right-handed alpha
Helix 29
AD2
B
235 249Right-handed alpha
Helix 30
AD3
B
256 267Right-handed alpha
Helix 31
AD4
B
267 280Right-handed alpha
Helix 32
AD5
B
281 293Right-handed alpha
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There are 8 sheets in PDB entry 5UXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
83 84anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
208 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
109 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
219 221parallel
Strand 3
A
191 193anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 27first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
89 92anti-parallel
Strand 5
B
83 84anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
202 205anti-parallel
Strand 3
B
208 212anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
108 110anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
219 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il