Analysis of interatomic Contacts of Structural Units in PDB entry:
5UXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UXC entry

There is 1 chain in PDB entry 5UXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PRO 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5UXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
56 71Right-handed alpha
Helix 5
AA5
A
72 74Right-handed 310
Helix 6
AA6
A
116 132Right-handed alpha
Helix 7
AA7
A
134 140Right-handed alpha
Helix 8
AA8
A
147 166Right-handed alpha
Helix 9
AA9
A
169 182Right-handed alpha
Helix 10
AB1
A
183 186Right-handed 310
Helix 11
AB2
A
222 226Right-handed 310
Helix 12
AB3
A
227 234Right-handed alpha
Helix 13
AB4
A
235 249Right-handed alpha
Helix 14
AB5
A
256 267Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
Helix 16
AB7
A
281 293Right-handed alpha
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There are 4 sheets in PDB entry 5UXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
83 84anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
208 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
108 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
219 221parallel
Strand 3
A
191 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il