Analysis of interatomic Contacts of Structural Units in PDB entry:
5UXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UXD entry

There are 2 chains in PDB entry 5UXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1ARG 298
B
 GLN -1GLU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5UXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
53 55Right-handed 310
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
116 132Right-handed alpha
Helix 6
AA6
A
134 140Right-handed alpha
Helix 7
AA7
A
147 166Right-handed alpha
Helix 8
AA8
A
169 182Right-handed alpha
Helix 9
AA9
A
183 186Right-handed 310
Helix 10
AB1
A
198 200Right-handed 310
Helix 11
AB2
A
222 226Right-handed 310
Helix 12
AB3
A
227 234Right-handed alpha
Helix 13
AB4
A
235 249Right-handed alpha
Helix 14
AB5
A
256 267Right-handed alpha
Helix 15
AB6
A
267 280Right-handed alpha
Helix 16
AB7
A
281 293Right-handed alpha
Helix 17
AB8
B
4 14Right-handed alpha
Helix 18
AB9
B
20 24Right-handed 310
Helix 19
AC1
B
53 55Right-handed 310
Helix 20
AC2
B
56 71Right-handed alpha
Helix 21
AC3
B
72 74Right-handed 310
Helix 22
AC4
B
116 132Right-handed alpha
Helix 23
AC5
B
134 140Right-handed alpha
Helix 24
AC6
B
147 166Right-handed alpha
Helix 25
AC7
B
169 182Right-handed alpha
Helix 26
AC8
B
183 186Right-handed 310
Helix 27
AC9
B
198 200Right-handed 310
Helix 28
AD1
B
222 226Right-handed 310
Helix 29
AD2
B
227 234Right-handed alpha
Helix 30
AD3
B
235 249Right-handed alpha
Helix 31
AD4
B
256 267Right-handed alpha
Helix 32
AD5
B
267 280Right-handed alpha
Helix 33
AD6
B
281 293Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5UXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 27first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
202 205anti-parallel
Strand 3
A
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
219 221anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
89 92anti-parallel
Strand 5
B
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
202 205anti-parallel
Strand 3
B
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
219 221parallel
Strand 3
B
191 193anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il