Analysis of interatomic Contacts of Structural Units in PDB entry:
5UY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UY7 entry

There is 1 chain in PDB entry 5UY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 232ILE 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5UY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
236 254Right-handed alpha
Helix 2
AA2
A
295 300Right-handed alpha
Helix 3
AA3
A
304 307Right-handed 310
Helix 4
AA4
A
308 319Right-handed alpha
Helix 5
AA5
A
353 360Right-handed alpha
Helix 6
AA6
A
361 370Right-handed alpha
Helix 7
AA7
A
373 384Right-handed alpha
Helix 8
AA8
A
404 408Right-handed 310
Helix 9
AA9
A
409 418Right-handed alpha
Helix 10
AB1
A
426 438Right-handed alpha
Helix 11
AB2
A
463 477Right-handed alpha
Helix 12
AB3
A
484 488Right-handed 310
Helix 13
AB4
A
544 563Right-handed alpha
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There are 5 sheets in PDB entry 5UY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 277first strand
Strand 2
A
258 265anti-parallel
Strand 3
A
528 535anti-parallel
Strand 4
A
513 521anti-parallel
Strand 5
A
495 502anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
424 425anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
350 352anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
340 343anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il