Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UYR entry

There are 2 chains in PDB entry 5UYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	ARG 631
B	VAL 12	ASP 632

There are 42 helices in PDB entry 5UYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	62	67	Right-handed alpha
Helix 5	AA5	A	128	141	Right-handed alpha
Helix 6	AA6	A	144	160	Right-handed alpha
Helix 7	AA7	A	196	200	Right-handed 310
Helix 8	AA8	A	201	211	Right-handed alpha
Helix 9	AA9	A	249	260	Right-handed alpha
Helix 10	AB1	A	290	337	Right-handed alpha
Helix 11	AB2	A	341	355	Right-handed alpha
Helix 12	AB3	A	377	390	Right-handed alpha
Helix 13	AB4	A	393	400	Right-handed alpha
Helix 14	AB5	A	408	413	Right-handed alpha
Helix 15	AB6	A	414	418	Right-handed 310
Helix 16	AB7	A	419	424	Right-handed alpha
Helix 17	AB8	A	490	499	Right-handed alpha
Helix 18	AB9	A	500	525	Right-handed alpha
Helix 19	AC1	A	548	556	Right-handed alpha
Helix 20	AC2	A	558	563	Right-handed alpha
Helix 21	AC3	A	576	590	Right-handed alpha
Helix 22	AC4	B	12	16	Right-handed 310
Helix 23	AC5	B	46	51	Right-handed alpha
Helix 24	AC6	B	54	59	Right-handed alpha
Helix 25	AC7	B	62	66	Right-handed 310
Helix 26	AC8	B	128	142	Right-handed alpha
Helix 27	AC9	B	144	160	Right-handed alpha
Helix 28	AD1	B	196	200	Right-handed 310
Helix 29	AD2	B	201	211	Right-handed alpha
Helix 30	AD3	B	249	260	Right-handed alpha
Helix 31	AD4	B	290	337	Right-handed alpha
Helix 32	AD5	B	341	355	Right-handed alpha
Helix 33	AD6	B	377	390	Right-handed alpha
Helix 34	AD7	B	393	400	Right-handed alpha
Helix 35	AD8	B	408	413	Right-handed alpha
Helix 36	AD9	B	414	418	Right-handed 310
Helix 37	AE1	B	419	424	Right-handed alpha
Helix 38	AE2	B	490	499	Right-handed alpha
Helix 39	AE3	B	500	525	Right-handed alpha
Helix 40	AE4	B	548	556	Right-handed alpha
Helix 41	AE5	B	566	571	Right-handed alpha
Helix 42	AE6	B	576	590	Right-handed alpha

There are 12 sheets in PDB entry 5UYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	224	225	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	113	119	anti-parallel
Strand 4	A	102	108	anti-parallel
Strand 5	A	82	88	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	176	183	anti-parallel
Strand 3	A	164	170	anti-parallel
Strand 4	A	274	283	anti-parallel
Strand 5	A	263	271	anti-parallel
Strand 6	A	213	216	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	373	first strand
Strand 2	A	360	365	anti-parallel
Strand 3	A	437	443	anti-parallel
Strand 4	A	425	429	anti-parallel
Strand 5	A	404	406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	480	482	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	547	first strand
Strand 2	A	530	534	anti-parallel
Strand 3	A	625	629	anti-parallel
Strand 4	A	608	616	anti-parallel
Strand 5	A	593	598	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	224	225	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	29	33	anti-parallel
Strand 3	B	113	119	anti-parallel
Strand 4	B	102	108	anti-parallel
Strand 5	B	82	88	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	176	183	anti-parallel
Strand 3	B	164	170	anti-parallel
Strand 4	B	274	283	anti-parallel
Strand 5	B	263	271	anti-parallel
Strand 6	B	213	216	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	373	first strand
Strand 2	B	360	365	anti-parallel
Strand 3	B	438	443	anti-parallel
Strand 4	B	425	429	anti-parallel
Strand 5	B	404	406	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	480	482	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	547	first strand
Strand 2	B	530	534	anti-parallel
Strand 3	B	625	630	anti-parallel
Strand 4	B	608	616	anti-parallel
Strand 5	B	593	598	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYR