Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UYT entry

There are 2 chains in PDB entry 5UYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23LEU 445
B
 GLN 23LEU 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5UYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
75 95Right-handed alpha
Helix 3
AA3
A
163 165Right-handed 310
Helix 4
AA4
A
239 243Right-handed 310
Helix 5
AA5
A
277 279Right-handed 310
Helix 6
AA6
A
290 310Right-handed alpha
Helix 7
AA7
A
318 322Right-handed 310
Helix 8
AA8
A
380 382Right-handed 310
Helix 9
AA9
B
27 31Right-handed 310
Helix 10
AB1
B
75 95Right-handed alpha
Helix 11
AB2
B
163 165Right-handed 310
Helix 12
AB3
B
239 243Right-handed 310
Helix 13
AB4
B
277 279Right-handed 310
Helix 14
AB5
B
290 310Right-handed alpha
Helix 15
AB6
B
318 322Right-handed 310
Helix 16
AB7
B
380 382Right-handed 310
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There are 18 sheets in PDB entry 5UYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
219 221parallel
Strand 3
A
201 208parallel
Strand 4
A
33 37parallel
Strand 5
A
53 56parallel
Strand 6
A
71 73parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
219 221parallel
Strand 3
A
201 208parallel
Strand 4
A
182 189parallel
Strand 5
A
167 171parallel
Strand 6
A
140 144parallel
Strand 7
A
114 118parallel
Strand 8
A
99 100parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
213 216parallel
Strand 3
A
194 196parallel
Strand 4
A
175 177parallel
Strand 5
A
148 150parallel
Strand 6
A
122 125parallel
Strand 7
A
104 106parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
127 131parallel
Strand 3
A
155 159parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
261 263parallel
Strand 3
A
436 438parallel
Strand 4
A
418 425parallel
Strand 5
A
245 249parallel
Strand 6
A
265 268parallel
Strand 7
A
285 286parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
261 263parallel
Strand 3
A
436 438parallel
Strand 4
A
418 425parallel
Strand 5
A
399 406parallel
Strand 6
A
384 388parallel
Strand 7
A
357 361parallel
Strand 8
A
332 335parallel
Strand 9
A
314 315parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
254 257parallel
Strand 3
A
430 433parallel
Strand 4
A
411 413parallel
Strand 5
A
392 394parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
344 348parallel
Strand 3
A
372 376parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
365 367parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
219 221parallel
Strand 3
B
201 208parallel
Strand 4
B
33 37parallel
Strand 5
B
53 56parallel
Strand 6
B
71 73parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
219 221parallel
Strand 3
B
201 208parallel
Strand 4
B
182 189parallel
Strand 5
B
167 171parallel
Strand 6
B
140 144parallel
Strand 7
B
114 118parallel
Strand 8
B
99 100parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
213 216parallel
Strand 3
B
194 196parallel
Strand 4
B
175 177parallel
Strand 5
B
148 150parallel
Strand 6
B
122 125parallel
Strand 7
B
104 106parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
127 131parallel
Strand 3
B
155 159parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
261 263parallel
Strand 3
B
436 438parallel
Strand 4
B
418 425parallel
Strand 5
B
245 249parallel
Strand 6
B
265 268parallel
Strand 7
B
285 286parallel
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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
261 263parallel
Strand 3
B
436 438parallel
Strand 4
B
418 425parallel
Strand 5
B
399 407parallel
Strand 6
B
384 389parallel
Strand 7
B
357 362parallel
Strand 8
B
332 335parallel
Strand 9
B
314 315parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
254 257parallel
Strand 3
B
430 433parallel
Strand 4
B
411 413parallel
Strand 5
B
392 394parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
344 348parallel
Strand 3
B
372 376parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
365 367parallel
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