Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UYX entry

There are 3 chains in PDB entry 5UYX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 31	PRO 536
B	LEU 31	PRO 536
C	LEU 31	ILE 385

There are 72 helices in PDB entry 5UYX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	50	Right-handed alpha
Helix 2	AA2	A	73	81	Right-handed alpha
Helix 3	AA3	A	85	103	Right-handed alpha
Helix 4	AA4	A	106	126	Right-handed alpha
Helix 5	AA5	A	129	152	Right-handed alpha
Helix 6	AA6	A	163	170	Right-handed 310
Helix 7	AA7	A	182	196	Right-handed alpha
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	270	294	Right-handed alpha
Helix 10	AB1	A	307	316	Right-handed alpha
Helix 11	AB2	A	330	337	Right-handed alpha
Helix 12	AB3	A	349	353	Right-handed 310
Helix 13	AB4	A	393	415	Right-handed alpha
Helix 14	AB5	A	423	439	Right-handed alpha
Helix 15	AB6	A	443	456	Right-handed alpha
Helix 16	AB7	A	456	465	Right-handed alpha
Helix 17	AB8	A	469	485	Right-handed alpha
Helix 18	AB9	A	502	506	Right-handed 310
Helix 19	AC1	A	509	529	Right-handed alpha
Helix 20	AC2	B	32	50	Right-handed alpha
Helix 21	AC3	B	73	81	Right-handed alpha
Helix 22	AC4	B	85	99	Right-handed alpha
Helix 23	AC5	B	105	127	Right-handed alpha
Helix 24	AC6	B	129	152	Right-handed alpha
Helix 25	AC7	B	163	168	Right-handed alpha
Helix 26	AC8	B	181	196	Right-handed alpha
Helix 27	AC9	B	270	294	Right-handed alpha
Helix 28	AD1	B	309	317	Right-handed alpha
Helix 29	AD2	B	326	337	Right-handed alpha
Helix 30	AD3	B	349	353	Right-handed 310
Helix 31	AD4	B	393	415	Right-handed alpha
Helix 32	AD5	B	423	439	Right-handed alpha
Helix 33	AD6	B	443	456	Right-handed alpha
Helix 34	AD7	B	456	466	Right-handed alpha
Helix 35	AD8	B	469	485	Right-handed alpha
Helix 36	AD9	B	509	529	Right-handed alpha
Helix 37	AE1	C	32	48	Right-handed alpha
Helix 38	AE2	C	73	81	Right-handed alpha
Helix 39	AE3	C	85	92	Right-handed alpha
Helix 40	AE4	C	95	100	Right-handed alpha
Helix 41	AE5	C	105	126	Right-handed alpha
Helix 42	AE6	C	129	152	Right-handed alpha
Helix 43	AE7	C	162	167	Right-handed alpha
Helix 44	AE8	C	182	196	Right-handed alpha
Helix 45	AE9	C	218	222	Right-handed 310
Helix 46	AF1	C	270	294	Right-handed alpha
Helix 47	AF2	C	306	317	Right-handed alpha
Helix 48	AF3	C	330	338	Right-handed alpha
Helix 49	AF4	C	397	415	Right-handed alpha
Helix 50	AF5	C	423	438	Right-handed alpha
Helix 51	AF6	C	443	456	Right-handed alpha
Helix 52	AF7	C	456	466	Right-handed alpha
Helix 53	AF8	C	469	484	Right-handed alpha
Helix 54	AF9	C	500	505	Right-handed alpha
Helix 55	AG1	C	509	529	Right-handed alpha
Helix 56	AG2	D	32	48	Right-handed alpha
Helix 57	AG3	D	73	80	Right-handed alpha
Helix 58	AG4	D	85	92	Right-handed alpha
Helix 59	AG5	D	105	127	Right-handed alpha
Helix 60	AG6	D	129	152	Right-handed alpha
Helix 61	AG7	D	159	161	Right-handed 310
Helix 62	AG8	D	162	167	Right-handed alpha
Helix 63	AG9	D	183	196	Right-handed alpha
Helix 64	AH1	D	269	294	Right-handed alpha
Helix 65	AH2	D	309	318	Right-handed alpha
Helix 66	AH3	D	326	338	Right-handed alpha
Helix 67	AH4	D	405	415	Right-handed alpha
Helix 68	AH5	D	423	439	Right-handed alpha
Helix 69	AH6	D	443	456	Right-handed alpha
Helix 70	AH7	D	456	466	Right-handed alpha
Helix 71	AH8	D	469	484	Right-handed alpha
Helix 72	AH9	D	509	528	Right-handed alpha

There are 18 sheets in PDB entry 5UYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	383	387	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	367	373	anti-parallel
Strand 3	A	356	364	anti-parallel
Strand 4	A	242	246	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	299	301	parallel
Strand 3	A	248	251	parallel
Strand 4	A	341	342	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	B	267	268	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	417	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	384	389	parallel
Strand 3	B	223	225	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	370	373	anti-parallel
Strand 3	B	354	359	anti-parallel
Strand 4	B	243	248	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	321	322	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	417	418	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	383	386	parallel
Strand 3	C	223	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	368	375	anti-parallel
Strand 3	C	353	363	anti-parallel
Strand 4	C	242	244	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	368	375	anti-parallel
Strand 3	C	353	363	anti-parallel
Strand 4	C	247	249	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	321	322	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	417	418	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	383	386	parallel
Strand 3	D	223	225	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	370	373	anti-parallel
Strand 3	D	356	361	anti-parallel
Strand 4	D	242	246	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	299	302	parallel
Strand 3	D	321	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UYX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYX