Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UYZ entry

There are 3 chains in PDB entry 5UYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 31	PRO 536
B	LEU 31	PRO 536
C	LEU 31	GLU 361

There are 71 helices in PDB entry 5UYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	49	Right-handed alpha
Helix 2	AA2	A	73	80	Right-handed alpha
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	106	126	Right-handed alpha
Helix 5	AA5	A	129	152	Right-handed alpha
Helix 6	AA6	A	162	170	Right-handed 310
Helix 7	AA7	A	181	196	Right-handed alpha
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	270	287	Right-handed alpha
Helix 10	AB1	A	288	294	Right-handed alpha
Helix 11	AB2	A	310	317	Right-handed alpha
Helix 12	AB3	A	329	337	Right-handed alpha
Helix 13	AB4	A	396	415	Right-handed alpha
Helix 14	AB5	A	423	439	Right-handed alpha
Helix 15	AB6	A	443	456	Right-handed alpha
Helix 16	AB7	A	456	466	Right-handed alpha
Helix 17	AB8	A	469	484	Right-handed alpha
Helix 18	AB9	A	510	529	Right-handed alpha
Helix 19	AC1	B	32	49	Right-handed alpha
Helix 20	AC2	B	73	80	Right-handed alpha
Helix 21	AC3	B	85	98	Right-handed alpha
Helix 22	AC4	B	106	126	Right-handed alpha
Helix 23	AC5	B	129	152	Right-handed alpha
Helix 24	AC6	B	162	167	Right-handed alpha
Helix 25	AC7	B	168	170	Right-handed 310
Helix 26	AC8	B	181	196	Right-handed alpha
Helix 27	AC9	B	218	222	Right-handed 310
Helix 28	AD1	B	270	295	Right-handed alpha
Helix 29	AD2	B	309	317	Right-handed alpha
Helix 30	AD3	B	326	337	Right-handed alpha
Helix 31	AD4	B	396	415	Right-handed alpha
Helix 32	AD5	B	423	439	Right-handed alpha
Helix 33	AD6	B	443	456	Right-handed alpha
Helix 34	AD7	B	456	467	Right-handed alpha
Helix 35	AD8	B	469	483	Right-handed alpha
Helix 36	AD9	B	510	530	Right-handed alpha
Helix 37	AE1	C	32	48	Right-handed alpha
Helix 38	AE2	C	74	79	Right-handed alpha
Helix 39	AE3	C	85	95	Right-handed alpha
Helix 40	AE4	C	106	126	Right-handed alpha
Helix 41	AE5	C	129	152	Right-handed alpha
Helix 42	AE6	C	162	167	Right-handed alpha
Helix 43	AE7	C	168	170	Right-handed 310
Helix 44	AE8	C	182	196	Right-handed alpha
Helix 45	AE9	C	218	222	Right-handed 310
Helix 46	AF1	C	271	293	Right-handed alpha
Helix 47	AF2	C	310	317	Right-handed alpha
Helix 48	AF3	C	326	337	Right-handed alpha
Helix 49	AF4	C	396	415	Right-handed alpha
Helix 50	AF5	C	423	438	Right-handed alpha
Helix 51	AF6	C	443	456	Right-handed alpha
Helix 52	AF7	C	456	466	Right-handed alpha
Helix 53	AF8	C	469	484	Right-handed alpha
Helix 54	AF9	C	510	529	Right-handed alpha
Helix 55	AG1	D	31	48	Right-handed alpha
Helix 56	AG2	D	73	80	Right-handed alpha
Helix 57	AG3	D	85	92	Right-handed alpha
Helix 58	AG4	D	106	127	Right-handed alpha
Helix 59	AG5	D	129	152	Right-handed alpha
Helix 60	AG6	D	161	167	Right-handed alpha
Helix 61	AG7	D	183	196	Right-handed alpha
Helix 62	AG8	D	270	295	Right-handed alpha
Helix 63	AG9	D	310	317	Right-handed alpha
Helix 64	AH1	D	330	337	Right-handed alpha
Helix 65	AH2	D	404	415	Right-handed alpha
Helix 66	AH3	D	423	438	Right-handed alpha
Helix 67	AH4	D	443	456	Right-handed alpha
Helix 68	AH5	D	456	467	Right-handed alpha
Helix 69	AH6	D	469	485	Right-handed alpha
Helix 70	AH7	D	502	506	Right-handed 310
Helix 71	AH8	D	510	530	Right-handed alpha

There are 15 sheets in PDB entry 5UYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	385	387	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	358	363	anti-parallel
Strand 3	A	368	373	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	300	302	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	385	387	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	301	302	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	371	373	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	300	302	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	268	269	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	363	first strand
Strand 2	C	368	373	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	300	302	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	361	first strand
Strand 2	D	370	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UYZ