Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UZ4 entry

There are 21 chains in PDB entry 5UZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 6	U 1532
C	GLY 1	ILE 206
D	ALA 1	LYS 205
E	GLU 9	LYS 158
F	MET 1	SER 100
G	ARG 3	ALA 151
H	SER 1	ALA 129
I	ASN 3	ARG 129
J	ARG 5	LEU 102
K	ARG 12	ARG 127
L	ALA 1	ALA 123
M	ALA 1	LYS 109
N	ALA 1	ALA 98
O	SER 3	ARG 88
P	MET 1	ALA 82
Q	LYS 3	VAL 82
R	ILE 20	THR 70
S	ARG 2	ARG 80
T	ASN 2	ALA 86
B	ALA 2	GLU 241
Z	LEU 6	VAL 339

There are 91 helices in PDB entry 5UZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	5	12	Right-handed alpha
Helix 2	AA2	C	24	45	Right-handed alpha
Helix 3	AA3	C	72	77	Right-handed alpha
Helix 4	AA4	C	80	90	Right-handed alpha
Helix 5	AA5	C	107	110	Right-handed 310
Helix 6	AA6	C	111	125	Right-handed alpha
Helix 7	AA7	C	128	139	Right-handed alpha
Helix 8	AA8	C	140	142	Right-handed 310
Helix 9	AA9	D	7	15	Right-handed alpha
Helix 10	AB1	D	50	65	Right-handed alpha
Helix 11	AB2	D	67	81	Right-handed alpha
Helix 12	AB3	D	84	96	Right-handed alpha
Helix 13	AB4	D	96	103	Right-handed alpha
Helix 14	AB5	D	109	119	Right-handed alpha
Helix 15	AB6	D	145	150	Right-handed alpha
Helix 16	AB7	D	151	161	Right-handed alpha
Helix 17	AB8	D	186	190	Right-handed 310
Helix 18	AB9	D	196	203	Right-handed alpha
Helix 19	AC1	E	54	68	Right-handed alpha
Helix 20	AC2	E	108	115	Right-handed alpha
Helix 21	AC3	E	131	144	Right-handed alpha
Helix 22	AC4	E	148	156	Right-handed alpha
Helix 23	AC5	F	14	16	Right-handed 310
Helix 24	AC6	F	17	31	Right-handed alpha
Helix 25	AC7	F	67	80	Right-handed alpha
Helix 26	AC8	G	19	30	Right-handed alpha
Helix 27	AC9	G	34	46	Right-handed alpha
Helix 28	AD1	G	56	67	Right-handed alpha
Helix 29	AD2	G	91	106	Right-handed alpha
Helix 30	AD3	G	114	127	Right-handed alpha
Helix 31	AD4	G	130	142	Right-handed alpha
Helix 32	AD5	H	4	19	Right-handed alpha
Helix 33	AD6	H	29	42	Right-handed alpha
Helix 34	AD7	H	93	98	Right-handed 310
Helix 35	AD8	H	112	119	Right-handed alpha
Helix 36	AD9	I	48	53	Right-handed alpha
Helix 37	AE1	I	70	90	Right-handed alpha
Helix 38	AE2	I	93	101	Right-handed alpha
Helix 39	AE3	J	14	29	Right-handed alpha
Helix 40	AE4	K	58	67	Right-handed alpha
Helix 41	AE5	K	68	72	Right-handed 310
Helix 42	AE6	K	93	103	Right-handed alpha
Helix 43	AE7	L	3	9	Right-handed alpha
Helix 44	AE8	M	13	19	Right-handed alpha
Helix 45	AE9	M	27	35	Right-handed alpha
Helix 46	AF1	M	48	62	Right-handed alpha
Helix 47	AF2	M	64	82	Right-handed alpha
Helix 48	AF3	M	84	91	Right-handed alpha
Helix 49	AF4	N	4	19	Right-handed alpha
Helix 50	AF5	N	23	26	Right-handed 310
Helix 51	AF6	N	27	32	Right-handed alpha
Helix 52	AF7	N	35	40	Right-handed alpha
Helix 53	AF8	N	80	89	Right-handed alpha
Helix 54	AF9	O	4	15	Right-handed alpha
Helix 55	AG1	O	23	45	Right-handed alpha
Helix 56	AG2	O	48	71	Right-handed alpha
Helix 57	AG3	O	73	84	Right-handed alpha
Helix 58	AG4	P	53	63	Right-handed alpha
Helix 59	AG5	P	68	78	Right-handed alpha
Helix 60	AG6	R	22	27	Right-handed alpha
Helix 61	AG7	R	28	31	Right-handed 310
Helix 62	AG8	R	40	44	Right-handed 310
Helix 63	AG9	R	47	64	Right-handed alpha
Helix 64	AH1	S	11	24	Right-handed alpha
Helix 65	AH2	S	69	74	Right-handed 310
Helix 66	AH3	T	5	40	Right-handed alpha
Helix 67	AH4	T	42	58	Right-handed alpha
Helix 68	AH5	T	59	63	Right-handed 310
Helix 69	AH6	T	67	84	Right-handed alpha
Helix 70	AH7	B	9	13	Right-handed 310
Helix 71	AH8	B	21	23	Right-handed 310
Helix 72	AH9	B	24	29	Right-handed 310
Helix 73	AI1	B	42	63	Right-handed alpha
Helix 74	AI2	B	73	87	Right-handed alpha
Helix 75	AI3	B	103	123	Right-handed alpha
Helix 76	AI4	B	130	147	Right-handed alpha
Helix 77	AI5	B	166	168	Right-handed 310
Helix 78	AI6	B	169	179	Right-handed alpha
Helix 79	AI7	B	206	225	Right-handed alpha
Helix 80	AI8	B	236	241	Right-handed alpha
Helix 81	AI9	Z	7	28	Right-handed alpha
Helix 82	AJ1	Z	87	92	Right-handed alpha
Helix 83	AJ2	Z	137	151	Right-handed alpha
Helix 84	AJ3	Z	161	165	Right-handed 310
Helix 85	AJ4	Z	166	171	Right-handed alpha
Helix 86	AJ5	Z	173	183	Right-handed alpha
Helix 87	AJ6	Z	197	205	Right-handed alpha
Helix 88	AJ7	Z	219	228	Right-handed alpha
Helix 89	AJ8	Z	289	294	Right-handed alpha
Helix 90	AJ9	Z	311	317	Right-handed alpha
Helix 91	AK1	Z	322	337	Right-handed alpha

There are 31 sheets in PDB entry 5UZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	98	104	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	147	152	anti-parallel
Strand 3	C	197	202	anti-parallel
Strand 4	C	182	185	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	141	144	anti-parallel
Strand 4	D	179	180	anti-parallel
Strand 5	D	171	172	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	18	first strand
Strand 2	E	32	40	anti-parallel
Strand 3	E	44	52	anti-parallel
Strand 4	E	71	72	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	28	30	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	91	95	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	122	123	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	46	first strand
Strand 2	F	56	65	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	84	90	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	83	85	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	47	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	124	129	anti-parallel
Strand 3	H	101	105	anti-parallel
Strand 4	H	108	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	10	first strand
Strand 2	I	15	22	anti-parallel
Strand 3	I	60	64	anti-parallel
Strand 4	I	27	29	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	10	first strand
Strand 2	I	15	22	anti-parallel
Strand 3	I	66	67	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	73	first strand
Strand 2	J	9	11	anti-parallel
Strand 3	J	97	99	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	52	first strand
Strand 2	J	62	66	anti-parallel
Strand 3	N	96	97	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	18	first strand
Strand 2	K	78	86	parallel
Strand 3	K	21	24	parallel
Strand 4	K	29	34	anti-parallel
Strand 5	K	40	45	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	18	first strand
Strand 2	K	78	86	parallel
Strand 3	K	105	111	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	31	first strand
Strand 2	L	79	83	anti-parallel
Strand 3	L	94	96	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	39	first strand
Strand 2	L	49	55	anti-parallel
Strand 3	L	61	65	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	72	73	first strand
Strand 2	N	78	79	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	3	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	32	39	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	10	first strand
Strand 2	Q	57	62	anti-parallel
Strand 3	Q	72	79	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	19	22	first strand
Strand 2	Q	43	46	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	30	31	first strand
Strand 2	S	48	51	parallel
Strand 3	S	56	57	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	31	35	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	67	70	parallel
Strand 3	B	160	161	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	198	201	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	40	48	first strand
Strand 2	Z	51	56	anti-parallel
Strand 3	Z	61	66	anti-parallel
Strand 4	Z	95	97	parallel
Strand 5	Z	78	83	anti-parallel
Strand 6	Z	40	48	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	106	109	first strand
Strand 2	Z	117	121	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	186	187	first strand
Strand 2	Z	154	158	parallel
Strand 3	Z	125	129	parallel
Strand 4	Z	210	214	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	255	257	first strand
Strand 2	Z	263	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZ4