Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UZ9 entry

There are 13 chains in PDB entry 5UZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 11	ASP 434
B	VAL 3	VAL 322
C	LEU 25	GLU 357
D	LEU 25	GLU 357
E	ILE 24	GLU 357
F	ILE 24	ALA 358
G	LEU 25	GLU 357
H	LEU 25	GLU 357
I	LYS 2	ASN 77
J	LYS 2	ASN 77
K	HIS 6	VAL 93
L	PHE -1	PHE 187
M	C 1	G 60

There are 84 helices in PDB entry 5UZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	28	Right-handed alpha
Helix 2	AA2	A	33	50	Right-handed alpha
Helix 3	AA3	A	50	59	Right-handed alpha
Helix 4	AA4	A	111	113	Right-handed 310
Helix 5	AA5	A	114	123	Right-handed alpha
Helix 6	AA6	A	131	136	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	148	161	Right-handed alpha
Helix 9	AA9	A	195	211	Right-handed alpha
Helix 10	AB1	A	213	225	Right-handed alpha
Helix 11	AB2	A	255	259	Right-handed 310
Helix 12	AB3	A	282	288	Right-handed alpha
Helix 13	AB4	A	294	306	Right-handed alpha
Helix 14	AB5	A	311	313	Right-handed 310
Helix 15	AB6	A	314	319	Right-handed alpha
Helix 16	AB7	A	320	326	Right-handed alpha
Helix 17	AB8	A	326	342	Right-handed alpha
Helix 18	AB9	A	357	363	Right-handed alpha
Helix 19	AC1	A	386	399	Right-handed alpha
Helix 20	AC2	A	409	429	Right-handed alpha
Helix 21	AC3	A	430	432	Right-handed 310
Helix 22	AC4	B	33	48	Right-handed alpha
Helix 23	AC5	B	116	121	Right-handed alpha
Helix 24	AC6	B	122	135	Right-handed alpha
Helix 25	AC7	B	165	177	Right-handed alpha
Helix 26	AC8	B	189	200	Right-handed alpha
Helix 27	AC9	B	207	213	Right-handed alpha
Helix 28	AD1	B	297	301	Right-handed 310
Helix 29	AD2	C	131	148	Right-handed alpha
Helix 30	AD3	C	150	163	Right-handed alpha
Helix 31	AD4	C	208	223	Right-handed alpha
Helix 32	AD5	C	275	284	Right-handed alpha
Helix 33	AD6	C	322	332	Right-handed alpha
Helix 34	AD7	C	338	352	Right-handed alpha
Helix 35	AD8	D	82	91	Right-handed alpha
Helix 36	AD9	D	131	148	Right-handed alpha
Helix 37	AE1	D	150	163	Right-handed alpha
Helix 38	AE2	D	208	223	Right-handed alpha
Helix 39	AE3	D	275	284	Right-handed alpha
Helix 40	AE4	D	322	332	Right-handed alpha
Helix 41	AE5	D	338	352	Right-handed alpha
Helix 42	AE6	E	82	92	Right-handed alpha
Helix 43	AE7	E	131	148	Right-handed alpha
Helix 44	AE8	E	150	163	Right-handed alpha
Helix 45	AE9	E	208	223	Right-handed alpha
Helix 46	AF1	E	275	284	Right-handed alpha
Helix 47	AF2	E	322	332	Right-handed alpha
Helix 48	AF3	E	338	352	Right-handed alpha
Helix 49	AF4	F	82	90	Right-handed alpha
Helix 50	AF5	F	131	148	Right-handed alpha
Helix 51	AF6	F	150	163	Right-handed alpha
Helix 52	AF7	F	208	223	Right-handed alpha
Helix 53	AF8	F	275	284	Right-handed alpha
Helix 54	AF9	F	322	332	Right-handed alpha
Helix 55	AG1	F	338	352	Right-handed alpha
Helix 56	AG2	G	82	92	Right-handed alpha
Helix 57	AG3	G	131	148	Right-handed alpha
Helix 58	AG4	G	150	163	Right-handed alpha
Helix 59	AG5	G	208	223	Right-handed alpha
Helix 60	AG6	G	275	284	Right-handed alpha
Helix 61	AG7	G	322	332	Right-handed alpha
Helix 62	AG8	G	338	352	Right-handed alpha
Helix 63	AG9	H	82	91	Right-handed alpha
Helix 64	AH1	H	131	148	Right-handed alpha
Helix 65	AH2	H	150	163	Right-handed alpha
Helix 66	AH3	H	208	223	Right-handed alpha
Helix 67	AH4	H	275	284	Right-handed alpha
Helix 68	AH5	H	322	332	Right-handed alpha
Helix 69	AH6	H	338	352	Right-handed alpha
Helix 70	AH7	I	46	55	Right-handed alpha
Helix 71	AH8	I	61	73	Right-handed alpha
Helix 72	AH9	J	46	55	Right-handed alpha
Helix 73	AI1	J	61	73	Right-handed alpha
Helix 74	AI2	K	6	10	Right-handed 310
Helix 75	AI3	K	15	26	Right-handed alpha
Helix 76	AI4	K	63	71	Right-handed alpha
Helix 77	AI5	K	82	87	Right-handed alpha
Helix 78	AI6	L	16	30	Right-handed alpha
Helix 79	AI7	L	63	69	Right-handed alpha
Helix 80	AI8	L	73	77	Right-handed 310
Helix 81	AI9	L	78	83	Right-handed alpha
Helix 82	AJ1	L	110	120	Right-handed alpha
Helix 83	AJ2	L	123	131	Right-handed alpha
Helix 84	AJ3	L	132	136	Right-handed 310

There are 43 sheets in PDB entry 5UZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	B	277	280	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	B	217	220	anti-parallel
Strand 3	B	240	241	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	262	264	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	11	18	anti-parallel
Strand 4	B	143	144	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	80	81	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	188	first strand
Strand 2	B	282	290	anti-parallel
Strand 3	B	248	255	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	314	317	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	31	33	anti-parallel
Strand 3	C	353	355	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	228	237	anti-parallel
Strand 4	C	177	183	anti-parallel
Strand 5	C	192	194	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	42	47	anti-parallel
Strand 4	C	271	274	anti-parallel
Strand 5	C	267	268	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	98	100	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	312	313	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	31	33	anti-parallel
Strand 3	D	353	355	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	109	118	anti-parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	177	183	anti-parallel
Strand 5	D	192	194	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	109	118	anti-parallel
Strand 3	D	42	47	anti-parallel
Strand 4	D	271	274	anti-parallel
Strand 5	D	267	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	70	first strand
Strand 2	D	94	100	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	312	313	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	31	33	anti-parallel
Strand 3	E	353	355	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	109	118	anti-parallel
Strand 3	E	228	237	anti-parallel
Strand 4	E	177	183	anti-parallel
Strand 5	E	192	194	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	109	118	anti-parallel
Strand 3	E	42	47	anti-parallel
Strand 4	E	271	274	anti-parallel
Strand 5	E	267	268	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	69	first strand
Strand 2	E	95	100	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	312	313	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	31	33	anti-parallel
Strand 3	F	353	355	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	109	118	anti-parallel
Strand 3	F	228	237	anti-parallel
Strand 4	F	177	183	anti-parallel
Strand 5	F	192	194	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	109	118	anti-parallel
Strand 3	F	42	47	anti-parallel
Strand 4	F	271	274	anti-parallel
Strand 5	F	267	268	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	70	first strand
Strand 2	F	94	100	anti-parallel
Strand 3	F	261	263	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	70	first strand
Strand 2	F	94	100	anti-parallel
Strand 3	I	11	12	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	306	307	first strand
Strand 2	F	312	313	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	128	first strand
Strand 2	G	31	33	anti-parallel
Strand 3	G	353	355	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	228	237	anti-parallel
Strand 4	G	177	183	anti-parallel
Strand 5	G	192	194	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	42	47	anti-parallel
Strand 4	G	271	274	anti-parallel
Strand 5	G	267	268	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	69	first strand
Strand 2	G	95	100	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	306	307	first strand
Strand 2	G	312	313	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	128	first strand
Strand 2	H	31	33	anti-parallel
Strand 3	H	353	355	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	109	118	anti-parallel
Strand 3	H	228	237	anti-parallel
Strand 4	H	177	183	anti-parallel
Strand 5	H	192	194	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	109	118	anti-parallel
Strand 3	H	42	47	anti-parallel
Strand 4	H	271	274	anti-parallel
Strand 5	H	267	268	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	70	first strand
Strand 2	H	94	100	anti-parallel
Strand 3	J	11	12	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	306	307	first strand
Strand 2	H	312	313	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	15	21	anti-parallel
Strand 3	I	26	32	anti-parallel
Strand 4	I	38	44	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	15	21	anti-parallel
Strand 3	J	26	32	anti-parallel
Strand 4	J	38	44	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	37	42	anti-parallel
Strand 3	K	48	52	anti-parallel
Strand 4	K	55	58	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	8	first strand
Strand 2	L	57	62	anti-parallel
Strand 3	L	41	43	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	97	98	first strand
Strand 2	L	184	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZ9