Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UZB entry

There are 14 chains in PDB entry 5UZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 79	SER 221
B	SER 79	SER 221
C	SER 79	SER 221
D	SER 79	SER 221
E	SER 79	SER 221
F	SER 79	SER 221
G	SER 79	SER 221
H	SER 79	SER 221
I	SER 79	SER 221
J	SER 79	SER 221
K	SER 79	SER 221
L	SER 79	SER 221
M	SER 79	SER 221
N	SER 79	SER 221

There are105 helices in PDB entry 5UZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	95	Right-handed 310
Helix 2	AA2	A	96	112	Right-handed alpha
Helix 3	AA3	A	118	123	Right-handed alpha
Helix 4	AA4	A	128	139	Right-handed alpha
Helix 5	AA5	A	148	154	Right-handed alpha
Helix 6	AA6	A	154	164	Right-handed alpha
Helix 7	AA7	A	165	168	Right-handed 310
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	204	220	Right-handed alpha
Helix 10	AB1	B	96	111	Right-handed alpha
Helix 11	AB2	B	128	140	Right-handed alpha
Helix 12	AB3	B	150	153	Right-handed 310
Helix 13	AB4	B	154	168	Right-handed alpha
Helix 14	AB5	B	183	187	Right-handed 310
Helix 15	AB6	B	201	221	Right-handed alpha
Helix 16	AB7	C	93	95	Right-handed 310
Helix 17	AB8	C	96	112	Right-handed alpha
Helix 18	AB9	C	118	123	Right-handed alpha
Helix 19	AC1	C	128	139	Right-handed alpha
Helix 20	AC2	C	148	154	Right-handed alpha
Helix 21	AC3	C	154	164	Right-handed alpha
Helix 22	AC4	C	165	168	Right-handed 310
Helix 23	AC5	C	190	194	Right-handed 310
Helix 24	AC6	C	204	220	Right-handed alpha
Helix 25	AC7	D	96	111	Right-handed alpha
Helix 26	AC8	D	128	140	Right-handed alpha
Helix 27	AC9	D	150	153	Right-handed 310
Helix 28	AD1	D	154	168	Right-handed alpha
Helix 29	AD2	D	183	187	Right-handed 310
Helix 30	AD3	D	201	221	Right-handed alpha
Helix 31	AD4	E	93	95	Right-handed 310
Helix 32	AD5	E	96	112	Right-handed alpha
Helix 33	AD6	E	118	123	Right-handed alpha
Helix 34	AD7	E	128	139	Right-handed alpha
Helix 35	AD8	E	148	154	Right-handed alpha
Helix 36	AD9	E	154	164	Right-handed alpha
Helix 37	AE1	E	165	168	Right-handed 310
Helix 38	AE2	E	190	194	Right-handed 310
Helix 39	AE3	E	204	220	Right-handed alpha
Helix 40	AE4	F	96	111	Right-handed alpha
Helix 41	AE5	F	128	140	Right-handed alpha
Helix 42	AE6	F	150	153	Right-handed 310
Helix 43	AE7	F	154	168	Right-handed alpha
Helix 44	AE8	F	183	187	Right-handed 310
Helix 45	AE9	F	201	221	Right-handed alpha
Helix 46	AF1	G	93	95	Right-handed 310
Helix 47	AF2	G	96	112	Right-handed alpha
Helix 48	AF3	G	118	123	Right-handed alpha
Helix 49	AF4	G	128	139	Right-handed alpha
Helix 50	AF5	G	148	154	Right-handed alpha
Helix 51	AF6	G	154	164	Right-handed alpha
Helix 52	AF7	G	165	168	Right-handed 310
Helix 53	AF8	G	190	194	Right-handed 310
Helix 54	AF9	G	204	220	Right-handed alpha
Helix 55	AG1	H	96	111	Right-handed alpha
Helix 56	AG2	H	128	140	Right-handed alpha
Helix 57	AG3	H	150	153	Right-handed 310
Helix 58	AG4	H	154	168	Right-handed alpha
Helix 59	AG5	H	183	187	Right-handed 310
Helix 60	AG6	H	201	221	Right-handed alpha
Helix 61	AG7	I	93	95	Right-handed 310
Helix 62	AG8	I	96	112	Right-handed alpha
Helix 63	AG9	I	118	123	Right-handed alpha
Helix 64	AH1	I	128	139	Right-handed alpha
Helix 65	AH2	I	148	154	Right-handed alpha
Helix 66	AH3	I	154	164	Right-handed alpha
Helix 67	AH4	I	165	168	Right-handed 310
Helix 68	AH5	I	190	194	Right-handed 310
Helix 69	AH6	I	204	220	Right-handed alpha
Helix 70	AH7	J	96	111	Right-handed alpha
Helix 71	AH8	J	128	140	Right-handed alpha
Helix 72	AH9	J	150	153	Right-handed 310
Helix 73	AI1	J	154	168	Right-handed alpha
Helix 74	AI2	J	183	187	Right-handed 310
Helix 75	AI3	J	201	221	Right-handed alpha
Helix 76	AI4	K	93	95	Right-handed 310
Helix 77	AI5	K	96	112	Right-handed alpha
Helix 78	AI6	K	118	123	Right-handed alpha
Helix 79	AI7	K	128	139	Right-handed alpha
Helix 80	AI8	K	148	154	Right-handed alpha
Helix 81	AI9	K	154	164	Right-handed alpha
Helix 82	AJ1	K	165	168	Right-handed 310
Helix 83	AJ2	K	190	194	Right-handed 310
Helix 84	AJ3	K	204	220	Right-handed alpha
Helix 85	AJ4	L	96	111	Right-handed alpha
Helix 86	AJ5	L	128	140	Right-handed alpha
Helix 87	AJ6	L	150	153	Right-handed 310
Helix 88	AJ7	L	154	168	Right-handed alpha
Helix 89	AJ8	L	183	187	Right-handed 310
Helix 90	AJ9	L	201	221	Right-handed alpha
Helix 91	AK1	M	93	95	Right-handed 310
Helix 92	AK2	M	96	112	Right-handed alpha
Helix 93	AK3	M	118	123	Right-handed alpha
Helix 94	AK4	M	128	139	Right-handed alpha
Helix 95	AK5	M	148	154	Right-handed alpha
Helix 96	AK6	M	154	164	Right-handed alpha
Helix 97	AK7	M	165	168	Right-handed 310
Helix 98	AK8	M	190	194	Right-handed 310
Helix 99	AK9	M	204	220	Right-handed alpha
Helix 100	AL1	N	96	111	Right-handed alpha
Helix 101	AL2	N	128	140	Right-handed alpha
Helix 102	AL3	N	150	153	Right-handed 310
Helix 103	AL4	N	154	168	Right-handed alpha
Helix 104	AL5	N	183	187	Right-handed 310
Helix 105	AL6	N	201	221	Right-handed alpha

There are 14 sheets in PDB entry 5UZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	88	91	parallel
Strand 3	A	142	146	parallel
Strand 4	A	174	178	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	88	91	parallel
Strand 3	B	142	146	parallel
Strand 4	B	174	178	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	88	91	parallel
Strand 3	C	142	146	parallel
Strand 4	C	174	178	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	88	91	parallel
Strand 3	D	142	146	parallel
Strand 4	D	174	178	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	88	91	parallel
Strand 3	E	142	146	parallel
Strand 4	E	174	178	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	117	first strand
Strand 2	F	88	91	parallel
Strand 3	F	142	146	parallel
Strand 4	F	174	178	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	88	91	parallel
Strand 3	G	142	146	parallel
Strand 4	G	174	178	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	117	first strand
Strand 2	H	88	91	parallel
Strand 3	H	142	146	parallel
Strand 4	H	174	178	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	116	117	first strand
Strand 2	I	88	91	parallel
Strand 3	I	142	146	parallel
Strand 4	I	174	178	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	116	117	first strand
Strand 2	J	88	91	parallel
Strand 3	J	142	146	parallel
Strand 4	J	174	178	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	116	117	first strand
Strand 2	K	88	91	parallel
Strand 3	K	142	146	parallel
Strand 4	K	174	178	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	117	first strand
Strand 2	L	88	91	parallel
Strand 3	L	142	146	parallel
Strand 4	L	174	178	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	116	117	first strand
Strand 2	M	88	91	parallel
Strand 3	M	142	146	parallel
Strand 4	M	174	178	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	116	117	first strand
Strand 2	N	88	91	parallel
Strand 3	N	142	146	parallel
Strand 4	N	174	178	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZB