Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UZH entry

There is 1 chain in PDB entry 5UZH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33SER 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5UZH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 56Right-handed alpha
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
81 86Right-handed alpha
Helix 4
AA4
A
98 110Right-handed alpha
Helix 5
AA5
A
122 129Right-handed alpha
Helix 6
AA6
A
129 138Right-handed alpha
Helix 7
AA7
A
138 151Right-handed alpha
Helix 8
AA8
A
166 169Right-handed 310
Helix 9
AA9
A
186 207Right-handed alpha
Helix 10
AB1
A
227 241Right-handed alpha
Helix 11
AB2
A
261 274Right-handed alpha
Helix 12
AB3
A
290 300Right-handed alpha
Helix 13
AB4
A
330 333Right-handed 310
Helix 14
AB5
A
345 353Right-handed alpha
Helix 15
AB6
A
359 377Right-handed alpha
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There are 4 sheets in PDB entry 5UZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
59 64parallel
Strand 3
A
35 39parallel
Strand 4
A
113 116parallel
Strand 5
A
158 164parallel
Strand 6
A
210 215parallel
Strand 7
A
280 282parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
259 260parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
323 328parallel
Strand 3
A
317 320anti-parallel
Strand 4
A
306 308anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
288 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il