Analysis of interatomic Contacts of Structural Units in PDB entry:
5UZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UZU entry

There are 3 chains in PDB entry 5UZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 33LYS 100
A
 CYS 167SER 315
A
 PRO 317ALA 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 5UZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
49 51Right-handed 310
Helix 2
AA2
B
52 60Right-handed alpha
Helix 3
AA3
B
65 78Right-handed alpha
Helix 4
AA4
B
83 94Right-handed alpha
Helix 5
AA5
A
226 235Right-handed alpha
Helix 6
AA6
A
238 242Right-handed 310
Helix 7
AA7
A
250 264Right-handed alpha
Helix 8
AA8
A
270 275Right-handed 310
Helix 9
AA9
A
339 344Right-handed alpha
Helix 10
AB1
A
346 353Right-handed alpha
Helix 11
AB2
A
385 390Right-handed alpha
Helix 12
AB3
A
409 434Right-handed alpha
Helix 13
AB4
A
438 461Right-handed alpha
Helix 14
AB5
A
461 476Right-handed alpha
Helix 15
AB6
A
491 498Right-handed alpha
Helix 16
AB7
A
499 505Right-handed 310
Helix 17
AB8
A
528 530Right-handed 310
Helix 18
AB9
A
533 540Right-handed alpha
Helix 19
AC1
A
543 552Right-handed alpha
Helix 20
AC2
A
565 570Right-handed alpha
Helix 21
AC3
A
582 594Right-handed alpha
Helix 22
AC4
A
598 606Right-handed alpha
Helix 23
AC5
A
613 622Right-handed alpha
Helix 24
AC6
A
623 635Right-handed alpha
Helix 25
AC7
A
636 640Right-handed 310
Helix 26
AC8
A
641 649Right-handed alpha
Helix 27
AC9
A
658 675Right-handed alpha
Helix 28
AD1
A
687 695Right-handed alpha
Helix 29
AD2
A
698 707Right-handed alpha
Helix 30
AD3
A
731 733Right-handed 310
Helix 31
AD4
A
737 742Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5UZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
40 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
330 331anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
554 556anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
309 310anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
524 526anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 713first strand
Strand 2
A
727 729anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il