Analysis of interatomic Contacts of Structural Units in PDB entry:
5V04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V04 entry

There are 3 chains in PDB entry 5V04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
GLY 2PHE 357
A
C 1 T 13
B
T 1 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5V04. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
Z
5 10Right-handed alpha
Helix 2
AA2
Z
20 23Right-handed 310
Helix 3
AA3
Z
31 41Right-handed alpha
Helix 4
AA4
Z
42 49Right-handed alpha
Helix 5
AA5
Z
53 69Right-handed alpha
Helix 6
AA6
Z
82 84Right-handed 310
Helix 7
AA7
Z
85 108Right-handed alpha
Helix 8
AA8
Z
111 121Right-handed alpha
Helix 9
AA9
Z
126 139Right-handed alpha
Helix 10
AB1
Z
150 161Right-handed alpha
Helix 11
AB2
Z
172 177Right-handed alpha
Helix 12
AB3
Z
198 207Right-handed 310
Helix 13
AB4
Z
211 223Right-handed alpha
Helix 14
AB5
Z
234 244Right-handed alpha
Helix 15
AB6
Z
249 256Right-handed alpha
Helix 16
AB7
Z
256 261Right-handed alpha
Helix 17
AB8
Z
268 285Right-handed alpha
Helix 18
AB9
Z
306 314Right-handed 310
Helix 19
AC1
Z
318 327Right-handed alpha
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There are 2 sheets in PDB entry 5V04. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
14 18first strand
Strand 2
Z
191 196anti-parallel
Strand 3
Z
181 184anti-parallel
Strand 4
Z
166 169parallel
Strand 5
Z
26 30parallel
Strand 6
Z
72 77parallel
Strand 7
Z
144 146parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
286 289first strand
Strand 2
Z
294 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il