Analysis of interatomic Contacts of Structural Units in PDB entry:
5V0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V0L entry

There are 4 chains in PDB entry 5V0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 81GLN 344
B
 ARG 37LEU 266
C
 G 4 G 20
D
 A 4 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5V0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 99Right-handed alpha
Helix 2
AA2
A
99 114Right-handed alpha
Helix 3
AA3
A
129 134Right-handed alpha
Helix 4
AA4
A
134 142Right-handed alpha
Helix 5
AA5
A
160 173Right-handed alpha
Helix 6
AA6
A
200 206Right-handed alpha
Helix 7
AA7
A
208 213Right-handed alpha
Helix 8
AA8
A
214 218Right-handed 310
Helix 9
AA9
B
37 41Right-handed 310
Helix 10
AB1
B
42 52Right-handed alpha
Helix 11
AB2
B
59 63Right-handed 310
Helix 12
AB3
B
64 80Right-handed alpha
Helix 13
AB4
B
114 119Right-handed alpha
Helix 14
AB5
B
147 152Right-handed alpha
Helix 15
AB6
B
156 160Right-handed 310
Helix 16
AB7
B
164 174Right-handed alpha
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There are 4 sheets in PDB entry 5V0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
177 179anti-parallel
Strand 3
A
338 339anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
308 310anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
258 264anti-parallel
Strand 3
B
232 238anti-parallel
Strand 4
B
209 210anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
228 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il