Analysis of interatomic Contacts of Structural Units in PDB entry:
5V0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V0P entry

There are 2 chains in PDB entry 5V0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLN 360
B
 GLN 3GLN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5V0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
32 41Right-handed alpha
Helix 3
AA3
A
51 68Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
91 100Right-handed alpha
Helix 6
AA6
A
111 113Right-handed 310
Helix 7
AA7
A
114 130Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
151 156Right-handed alpha
Helix 10
AB1
A
185 188Right-handed 310
Helix 11
AB2
A
215 239Right-handed alpha
Helix 12
AB3
A
241 245Right-handed 310
Helix 13
AB4
A
254 266Right-handed alpha
Helix 14
AB5
A
268 272Right-handed 310
Helix 15
AB6
A
275 280Right-handed alpha
Helix 16
AB7
A
282 284Right-handed 310
Helix 17
AB8
A
285 297Right-handed alpha
Helix 18
AB9
A
344 360Right-handed alpha
Helix 19
AC1
B
22 27Right-handed alpha
Helix 20
AC2
B
32 41Right-handed alpha
Helix 21
AC3
B
51 68Right-handed alpha
Helix 22
AC4
B
70 72Right-handed 310
Helix 23
AC5
B
91 100Right-handed alpha
Helix 24
AC6
B
111 113Right-handed 310
Helix 25
AC7
B
114 130Right-handed alpha
Helix 26
AC8
B
144 147Right-handed 310
Helix 27
AC9
B
151 156Right-handed alpha
Helix 28
AD1
B
185 188Right-handed 310
Helix 29
AD2
B
215 239Right-handed alpha
Helix 30
AD3
B
241 245Right-handed 310
Helix 31
AD4
B
254 266Right-handed alpha
Helix 32
AD5
B
268 272Right-handed 310
Helix 33
AD6
B
275 280Right-handed alpha
Helix 34
AD7
B
282 284Right-handed 310
Helix 35
AD8
B
285 297Right-handed alpha
Helix 36
AD9
B
344 360Right-handed alpha
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There are 7 sheets in PDB entry 5V0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
134 142anti-parallel
Strand 4
A
76 80parallel
Strand 5
A
105 110parallel
Strand 6
B
105 110anti-parallel
Strand 7
B
74 80parallel
Strand 8
B
134 142parallel
Strand 9
B
160 170anti-parallel
Strand 10
B
5 14anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
44 46anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 183first strand
Strand 2
A
316 323anti-parallel
Strand 3
A
305 312anti-parallel
Strand 4
A
247 250parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
213 214anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
44 46anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 183first strand
Strand 2
B
316 323anti-parallel
Strand 3
B
305 312anti-parallel
Strand 4
B
247 250parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
213 214anti-parallel
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