Analysis of interatomic Contacts of Structural Units in PDB entry:
5V0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V0T entry

There are 3 chains in PDB entry 5V0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	GLY 467
B	GLY 10	GLY 467
C	GLY 10	GLU 355

There are188 helices in PDB entry 5V0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	44	Right-handed alpha
Helix 2	AA2	A	79	86	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	93	99	Right-handed alpha
Helix 5	AA5	A	108	127	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	141	144	Right-handed 310
Helix 8	AA8	A	145	153	Right-handed alpha
Helix 9	AA9	A	169	174	Right-handed alpha
Helix 10	AB1	A	178	187	Right-handed alpha
Helix 11	AB2	A	196	210	Right-handed alpha
Helix 12	AB3	A	242	253	Right-handed alpha
Helix 13	AB4	A	256	267	Right-handed alpha
Helix 14	AB5	A	279	282	Right-handed 310
Helix 15	AB6	A	283	298	Right-handed alpha
Helix 16	AB7	A	299	302	Right-handed 310
Helix 17	AB8	A	318	340	Right-handed alpha
Helix 18	AB9	A	355	364	Right-handed alpha
Helix 19	AC1	A	379	389	Right-handed alpha
Helix 20	AC2	A	403	408	Right-handed 310
Helix 21	AC3	A	419	433	Right-handed alpha
Helix 22	AC4	A	434	452	Right-handed alpha
Helix 23	AC5	A	453	467	Right-handed alpha
Helix 24	AC6	B	30	44	Right-handed alpha
Helix 25	AC7	B	79	86	Right-handed alpha
Helix 26	AC8	B	88	93	Right-handed alpha
Helix 27	AC9	B	93	99	Right-handed alpha
Helix 28	AD1	B	108	127	Right-handed alpha
Helix 29	AD2	B	128	130	Right-handed 310
Helix 30	AD3	B	141	144	Right-handed 310
Helix 31	AD4	B	145	153	Right-handed alpha
Helix 32	AD5	B	169	174	Right-handed alpha
Helix 33	AD6	B	178	187	Right-handed alpha
Helix 34	AD7	B	196	210	Right-handed alpha
Helix 35	AD8	B	242	253	Right-handed alpha
Helix 36	AD9	B	256	267	Right-handed alpha
Helix 37	AE1	B	279	282	Right-handed 310
Helix 38	AE2	B	283	298	Right-handed alpha
Helix 39	AE3	B	299	302	Right-handed 310
Helix 40	AE4	B	318	340	Right-handed alpha
Helix 41	AE5	B	355	364	Right-handed alpha
Helix 42	AE6	B	379	389	Right-handed alpha
Helix 43	AE7	B	403	408	Right-handed 310
Helix 44	AE8	B	419	433	Right-handed alpha
Helix 45	AE9	B	434	452	Right-handed alpha
Helix 46	AF1	B	453	467	Right-handed alpha
Helix 47	AF2	C	30	41	Right-handed alpha
Helix 48	AF3	C	79	86	Right-handed alpha
Helix 49	AF4	C	88	93	Right-handed alpha
Helix 50	AF5	C	93	99	Right-handed alpha
Helix 51	AF6	C	101	105	Right-handed 310
Helix 52	AF7	C	108	127	Right-handed alpha
Helix 53	AF8	C	128	130	Right-handed 310
Helix 54	AF9	C	141	144	Right-handed 310
Helix 55	AG1	C	145	153	Right-handed alpha
Helix 56	AG2	C	169	174	Right-handed alpha
Helix 57	AG3	C	178	187	Right-handed alpha
Helix 58	AG4	C	196	211	Right-handed alpha
Helix 59	AG5	C	242	253	Right-handed alpha
Helix 60	AG6	C	256	267	Right-handed alpha
Helix 61	AG7	C	279	282	Right-handed 310
Helix 62	AG8	C	283	298	Right-handed alpha
Helix 63	AG9	C	299	302	Right-handed 310
Helix 64	AH1	C	318	340	Right-handed alpha
Helix 65	AH2	C	355	364	Right-handed alpha
Helix 66	AH3	C	379	389	Right-handed alpha
Helix 67	AH4	C	403	408	Right-handed 310
Helix 68	AH5	C	419	432	Right-handed alpha
Helix 69	AH6	C	434	452	Right-handed alpha
Helix 70	AH7	C	453	467	Right-handed alpha
Helix 71	AH8	D	30	41	Right-handed alpha
Helix 72	AH9	D	79	86	Right-handed alpha
Helix 73	AI1	D	88	93	Right-handed alpha
Helix 74	AI2	D	93	99	Right-handed alpha
Helix 75	AI3	D	101	105	Right-handed 310
Helix 76	AI4	D	108	127	Right-handed alpha
Helix 77	AI5	D	128	130	Right-handed 310
Helix 78	AI6	D	141	144	Right-handed 310
Helix 79	AI7	D	145	153	Right-handed alpha
Helix 80	AI8	D	169	174	Right-handed alpha
Helix 81	AI9	D	178	187	Right-handed alpha
Helix 82	AJ1	D	196	211	Right-handed alpha
Helix 83	AJ2	D	242	253	Right-handed alpha
Helix 84	AJ3	D	256	267	Right-handed alpha
Helix 85	AJ4	D	279	282	Right-handed 310
Helix 86	AJ5	D	283	298	Right-handed alpha
Helix 87	AJ6	D	299	302	Right-handed 310
Helix 88	AJ7	D	318	340	Right-handed alpha
Helix 89	AJ8	D	355	364	Right-handed alpha
Helix 90	AJ9	D	379	389	Right-handed alpha
Helix 91	AK1	D	403	408	Right-handed 310
Helix 92	AK2	D	419	432	Right-handed alpha
Helix 93	AK3	D	434	452	Right-handed alpha
Helix 94	AK4	D	453	467	Right-handed alpha
Helix 95	AK5	E	30	41	Right-handed alpha
Helix 96	AK6	E	79	86	Right-handed alpha
Helix 97	AK7	E	88	93	Right-handed alpha
Helix 98	AK8	E	93	99	Right-handed alpha
Helix 99	AK9	E	101	105	Right-handed 310
Helix 100	AL1	E	108	127	Right-handed alpha
Helix 101	AL2	E	128	130	Right-handed 310
Helix 102	AL3	E	141	144	Right-handed 310
Helix 103	AL4	E	145	153	Right-handed alpha
Helix 104	AL5	E	169	174	Right-handed alpha
Helix 105	AL6	E	178	187	Right-handed alpha
Helix 106	AL7	E	196	211	Right-handed alpha
Helix 107	AL8	E	242	253	Right-handed alpha
Helix 108	AL9	E	256	267	Right-handed alpha
Helix 109	AM1	E	279	282	Right-handed 310
Helix 110	AM2	E	283	298	Right-handed alpha
Helix 111	AM3	E	299	302	Right-handed 310
Helix 112	AM4	E	318	340	Right-handed alpha
Helix 113	AM5	E	355	364	Right-handed alpha
Helix 114	AM6	E	379	389	Right-handed alpha
Helix 115	AM7	E	403	408	Right-handed 310
Helix 116	AM8	E	419	432	Right-handed alpha
Helix 117	AM9	E	434	452	Right-handed alpha
Helix 118	AN1	E	453	466	Right-handed alpha
Helix 119	AN2	F	30	41	Right-handed alpha
Helix 120	AN3	F	79	86	Right-handed alpha
Helix 121	AN4	F	88	93	Right-handed alpha
Helix 122	AN5	F	93	99	Right-handed alpha
Helix 123	AN6	F	101	105	Right-handed 310
Helix 124	AN7	F	108	127	Right-handed alpha
Helix 125	AN8	F	128	130	Right-handed 310
Helix 126	AN9	F	141	144	Right-handed 310
Helix 127	AO1	F	145	153	Right-handed alpha
Helix 128	AO2	F	169	174	Right-handed alpha
Helix 129	AO3	F	178	187	Right-handed alpha
Helix 130	AO4	F	196	210	Right-handed alpha
Helix 131	AO5	F	242	253	Right-handed alpha
Helix 132	AO6	F	256	267	Right-handed alpha
Helix 133	AO7	F	279	282	Right-handed 310
Helix 134	AO8	F	283	298	Right-handed alpha
Helix 135	AO9	F	299	302	Right-handed 310
Helix 136	AP1	F	318	340	Right-handed alpha
Helix 137	AP2	F	355	364	Right-handed alpha
Helix 138	AP3	F	379	389	Right-handed alpha
Helix 139	AP4	F	403	408	Right-handed 310
Helix 140	AP5	F	419	433	Right-handed alpha
Helix 141	AP6	F	434	452	Right-handed alpha
Helix 142	AP7	F	453	466	Right-handed alpha
Helix 143	AP8	G	30	41	Right-handed alpha
Helix 144	AP9	G	79	86	Right-handed alpha
Helix 145	AQ1	G	88	93	Right-handed alpha
Helix 146	AQ2	G	93	99	Right-handed alpha
Helix 147	AQ3	G	108	127	Right-handed alpha
Helix 148	AQ4	G	128	130	Right-handed 310
Helix 149	AQ5	G	141	144	Right-handed 310
Helix 150	AQ6	G	145	153	Right-handed alpha
Helix 151	AQ7	G	169	174	Right-handed alpha
Helix 152	AQ8	G	178	187	Right-handed alpha
Helix 153	AQ9	G	196	210	Right-handed alpha
Helix 154	AR1	G	242	253	Right-handed alpha
Helix 155	AR2	G	256	267	Right-handed alpha
Helix 156	AR3	G	279	282	Right-handed 310
Helix 157	AR4	G	283	298	Right-handed alpha
Helix 158	AR5	G	299	302	Right-handed 310
Helix 159	AR6	G	318	340	Right-handed alpha
Helix 160	AR7	G	355	364	Right-handed alpha
Helix 161	AR8	G	379	389	Right-handed alpha
Helix 162	AR9	G	403	408	Right-handed 310
Helix 163	AS1	G	419	433	Right-handed alpha
Helix 164	AS2	G	434	452	Right-handed alpha
Helix 165	AS3	G	453	467	Right-handed alpha
Helix 166	AS4	H	30	41	Right-handed alpha
Helix 167	AS5	H	79	86	Right-handed alpha
Helix 168	AS6	H	88	93	Right-handed alpha
Helix 169	AS7	H	93	99	Right-handed alpha
Helix 170	AS8	H	108	127	Right-handed alpha
Helix 171	AS9	H	128	130	Right-handed 310
Helix 172	AT1	H	141	144	Right-handed 310
Helix 173	AT2	H	145	153	Right-handed alpha
Helix 174	AT3	H	169	174	Right-handed alpha
Helix 175	AT4	H	178	187	Right-handed alpha
Helix 176	AT5	H	196	211	Right-handed alpha
Helix 177	AT6	H	242	253	Right-handed alpha
Helix 178	AT7	H	256	267	Right-handed alpha
Helix 179	AT8	H	279	282	Right-handed 310
Helix 180	AT9	H	283	298	Right-handed alpha
Helix 181	AU1	H	299	302	Right-handed 310
Helix 182	AU2	H	318	340	Right-handed alpha
Helix 183	AU3	H	355	364	Right-handed alpha
Helix 184	AU4	H	379	389	Right-handed alpha
Helix 185	AU5	H	403	408	Right-handed 310
Helix 186	AU6	H	419	433	Right-handed alpha
Helix 187	AU7	H	434	452	Right-handed alpha
Helix 188	AU8	H	453	467	Right-handed alpha

There are 16 sheets in PDB entry 5V0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	70	78	anti-parallel
Strand 3	A	45	55	parallel
Strand 4	A	12	18	parallel
Strand 5	A	135	139	parallel
Strand 6	A	159	162	parallel
Strand 7	A	191	194	parallel
Strand 8	A	230	236	parallel
Strand 9	A	223	227	anti-parallel
Strand 10	A	214	216	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	305	310	parallel
Strand 3	A	270	275	parallel
Strand 4	A	368	371	parallel
Strand 5	A	396	400	parallel
Strand 6	A	413	415	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	70	78	anti-parallel
Strand 3	B	45	55	parallel
Strand 4	B	12	18	parallel
Strand 5	B	135	139	parallel
Strand 6	B	159	162	parallel
Strand 7	B	191	194	parallel
Strand 8	B	230	236	parallel
Strand 9	B	223	227	anti-parallel
Strand 10	B	214	216	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	305	310	parallel
Strand 3	B	270	275	parallel
Strand 4	B	368	371	parallel
Strand 5	B	396	400	parallel
Strand 6	B	413	415	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	70	78	anti-parallel
Strand 3	C	45	55	parallel
Strand 4	C	12	18	parallel
Strand 5	C	135	139	parallel
Strand 6	C	159	162	parallel
Strand 7	C	191	194	parallel
Strand 8	C	230	236	parallel
Strand 9	C	223	227	anti-parallel
Strand 10	C	214	216	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	305	310	parallel
Strand 3	C	270	275	parallel
Strand 4	C	368	371	parallel
Strand 5	C	396	400	parallel
Strand 6	C	413	415	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	70	78	anti-parallel
Strand 3	D	45	55	parallel
Strand 4	D	12	16	parallel
Strand 5	D	135	139	parallel
Strand 6	D	159	162	parallel
Strand 7	D	191	194	parallel
Strand 8	D	230	236	parallel
Strand 9	D	223	227	anti-parallel
Strand 10	D	214	216	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	305	310	parallel
Strand 3	D	270	275	parallel
Strand 4	D	368	371	parallel
Strand 5	D	396	400	parallel
Strand 6	D	413	415	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	70	78	anti-parallel
Strand 3	E	45	55	parallel
Strand 4	E	12	16	parallel
Strand 5	E	135	139	parallel
Strand 6	E	158	162	parallel
Strand 7	E	191	194	parallel
Strand 8	E	230	236	parallel
Strand 9	E	223	227	anti-parallel
Strand 10	E	214	216	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	350	first strand
Strand 2	E	305	310	parallel
Strand 3	E	270	275	parallel
Strand 4	E	368	371	parallel
Strand 5	E	396	400	parallel
Strand 6	E	413	415	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	78	anti-parallel
Strand 3	F	45	55	parallel
Strand 4	F	12	18	parallel
Strand 5	F	135	139	parallel
Strand 6	F	159	162	parallel
Strand 7	F	191	194	parallel
Strand 8	F	230	236	parallel
Strand 9	F	223	227	anti-parallel
Strand 10	F	214	216	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	350	first strand
Strand 2	F	305	310	parallel
Strand 3	F	270	275	parallel
Strand 4	F	368	371	parallel
Strand 5	F	396	400	parallel
Strand 6	F	413	415	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	67	first strand
Strand 2	G	70	78	anti-parallel
Strand 3	G	45	55	parallel
Strand 4	G	12	18	parallel
Strand 5	G	135	139	parallel
Strand 6	G	158	162	parallel
Strand 7	G	191	194	parallel
Strand 8	G	230	236	parallel
Strand 9	G	223	227	anti-parallel
Strand 10	G	214	216	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	305	310	parallel
Strand 3	G	270	275	parallel
Strand 4	G	368	371	parallel
Strand 5	G	396	400	parallel
Strand 6	G	413	415	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	67	first strand
Strand 2	H	70	78	anti-parallel
Strand 3	H	45	55	parallel
Strand 4	H	12	18	parallel
Strand 5	H	135	139	parallel
Strand 6	H	158	162	parallel
Strand 7	H	191	194	parallel
Strand 8	H	230	236	parallel
Strand 9	H	223	227	anti-parallel
Strand 10	H	214	216	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	350	first strand
Strand 2	H	305	310	parallel
Strand 3	H	270	275	parallel
Strand 4	H	368	371	parallel
Strand 5	H	396	400	parallel
Strand 6	H	413	415	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V0T