Analysis of interatomic Contacts of Structural Units in PDB entry:
5V12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V12 entry

There are 16 chains in PDB entry 5V12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 22	HIS 246
E	TRP 248	LYS 470
G	THR 21	HIS 246
G	TRP 248	LYS 470
F	THR 21	HIS 246
F	TRP 248	LYS 470
H	PRO 23	HIS 246
H	TRP 248	TYR 469
C	PRO 23	HIS 246
C	TRP 248	LYS 470
D	GLY 22	HIS 246
D	TRP 248	LYS 470
A	GLY 22	HIS 246
A	TRP 248	GLU 471
B	GLY 22	HIS 246
B	TRP 248	LYS 470

There are158 helices in PDB entry 5V12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	27	34	Right-handed 310
Helix 2	AA2	E	44	49	Right-handed alpha
Helix 3	AA3	E	52	69	Right-handed alpha
Helix 4	AA4	E	69	94	Right-handed alpha
Helix 5	AA5	E	96	98	Right-handed 310
Helix 6	AA6	E	105	115	Right-handed alpha
Helix 7	AA7	E	134	148	Right-handed alpha
Helix 8	AA8	E	164	182	Right-handed alpha
Helix 9	AA9	E	203	214	Right-handed alpha
Helix 10	AB1	E	232	237	Right-handed alpha
Helix 11	AB2	E	245	249	Right-handed alpha
Helix 12	AB3	E	264	268	Right-handed 310
Helix 13	AB4	E	296	302	Right-handed alpha
Helix 14	AB5	E	310	315	Right-handed alpha
Helix 15	AB6	E	315	326	Right-handed alpha
Helix 16	AB7	E	329	353	Right-handed alpha
Helix 17	AB8	E	389	395	Right-handed alpha
Helix 18	AB9	E	403	405	Right-handed 310
Helix 19	AC1	E	406	421	Right-handed alpha
Helix 20	AC2	E	446	466	Right-handed alpha
Helix 21	AC3	G	27	34	Right-handed 310
Helix 22	AC4	G	52	69	Right-handed alpha
Helix 23	AC5	G	69	94	Right-handed alpha
Helix 24	AC6	G	96	98	Right-handed 310
Helix 25	AC7	G	105	117	Right-handed alpha
Helix 26	AC8	G	134	148	Right-handed alpha
Helix 27	AC9	G	164	182	Right-handed alpha
Helix 28	AD1	G	203	214	Right-handed alpha
Helix 29	AD2	G	232	237	Right-handed alpha
Helix 30	AD3	G	245	249	Right-handed alpha
Helix 31	AD4	G	261	268	Right-handed 310
Helix 32	AD5	G	296	302	Right-handed alpha
Helix 33	AD6	G	310	315	Right-handed alpha
Helix 34	AD7	G	315	326	Right-handed alpha
Helix 35	AD8	G	329	353	Right-handed alpha
Helix 36	AD9	G	389	395	Right-handed alpha
Helix 37	AE1	G	403	405	Right-handed 310
Helix 38	AE2	G	406	421	Right-handed alpha
Helix 39	AE3	G	446	465	Right-handed alpha
Helix 40	AE4	F	27	34	Right-handed 310
Helix 41	AE5	F	52	69	Right-handed alpha
Helix 42	AE6	F	69	94	Right-handed alpha
Helix 43	AE7	F	96	98	Right-handed 310
Helix 44	AE8	F	105	115	Right-handed alpha
Helix 45	AE9	F	134	148	Right-handed alpha
Helix 46	AF1	F	164	182	Right-handed alpha
Helix 47	AF2	F	203	214	Right-handed alpha
Helix 48	AF3	F	232	237	Right-handed alpha
Helix 49	AF4	F	245	249	Right-handed alpha
Helix 50	AF5	F	261	268	Right-handed 310
Helix 51	AF6	F	296	302	Right-handed alpha
Helix 52	AF7	F	310	315	Right-handed alpha
Helix 53	AF8	F	315	326	Right-handed alpha
Helix 54	AF9	F	329	353	Right-handed alpha
Helix 55	AG1	F	389	397	Right-handed alpha
Helix 56	AG2	F	403	405	Right-handed 310
Helix 57	AG3	F	406	421	Right-handed alpha
Helix 58	AG4	F	446	466	Right-handed alpha
Helix 59	AG5	H	27	34	Right-handed 310
Helix 60	AG6	H	44	49	Right-handed alpha
Helix 61	AG7	H	52	69	Right-handed alpha
Helix 62	AG8	H	69	77	Right-handed alpha
Helix 63	AG9	H	77	94	Right-handed alpha
Helix 64	AH1	H	96	98	Right-handed 310
Helix 65	AH2	H	105	115	Right-handed alpha
Helix 66	AH3	H	134	148	Right-handed alpha
Helix 67	AH4	H	164	182	Right-handed alpha
Helix 68	AH5	H	203	214	Right-handed alpha
Helix 69	AH6	H	232	237	Right-handed alpha
Helix 70	AH7	H	245	249	Right-handed alpha
Helix 71	AH8	H	296	302	Right-handed alpha
Helix 72	AH9	H	310	315	Right-handed alpha
Helix 73	AI1	H	315	326	Right-handed alpha
Helix 74	AI2	H	329	353	Right-handed alpha
Helix 75	AI3	H	389	394	Right-handed alpha
Helix 76	AI4	H	403	405	Right-handed 310
Helix 77	AI5	H	406	421	Right-handed alpha
Helix 78	AI6	H	446	466	Right-handed alpha
Helix 79	AI7	C	27	34	Right-handed 310
Helix 80	AI8	C	44	49	Right-handed alpha
Helix 81	AI9	C	52	69	Right-handed alpha
Helix 82	AJ1	C	69	77	Right-handed alpha
Helix 83	AJ2	C	77	94	Right-handed alpha
Helix 84	AJ3	C	96	98	Right-handed 310
Helix 85	AJ4	C	105	115	Right-handed alpha
Helix 86	AJ5	C	134	148	Right-handed alpha
Helix 87	AJ6	C	164	182	Right-handed alpha
Helix 88	AJ7	C	203	214	Right-handed alpha
Helix 89	AJ8	C	232	237	Right-handed alpha
Helix 90	AJ9	C	245	249	Right-handed alpha
Helix 91	AK1	C	261	268	Right-handed 310
Helix 92	AK2	C	296	302	Right-handed alpha
Helix 93	AK3	C	310	315	Right-handed alpha
Helix 94	AK4	C	315	326	Right-handed alpha
Helix 95	AK5	C	329	352	Right-handed alpha
Helix 96	AK6	C	389	395	Right-handed alpha
Helix 97	AK7	C	403	405	Right-handed 310
Helix 98	AK8	C	406	421	Right-handed alpha
Helix 99	AK9	C	446	466	Right-handed alpha
Helix 100	AL1	D	27	34	Right-handed 310
Helix 101	AL2	D	44	49	Right-handed alpha
Helix 102	AL3	D	52	69	Right-handed alpha
Helix 103	AL4	D	69	77	Right-handed alpha
Helix 104	AL5	D	77	94	Right-handed alpha
Helix 105	AL6	D	96	98	Right-handed 310
Helix 106	AL7	D	105	117	Right-handed alpha
Helix 107	AL8	D	134	148	Right-handed alpha
Helix 108	AL9	D	164	182	Right-handed alpha
Helix 109	AM1	D	203	214	Right-handed alpha
Helix 110	AM2	D	232	237	Right-handed alpha
Helix 111	AM3	D	245	249	Right-handed alpha
Helix 112	AM4	D	261	268	Right-handed 310
Helix 113	AM5	D	296	302	Right-handed alpha
Helix 114	AM6	D	310	315	Right-handed alpha
Helix 115	AM7	D	315	326	Right-handed alpha
Helix 116	AM8	D	329	353	Right-handed alpha
Helix 117	AM9	D	389	395	Right-handed alpha
Helix 118	AN1	D	403	405	Right-handed 310
Helix 119	AN2	D	406	421	Right-handed alpha
Helix 120	AN3	D	446	466	Right-handed alpha
Helix 121	AN4	A	27	34	Right-handed 310
Helix 122	AN5	A	52	69	Right-handed alpha
Helix 123	AN6	A	69	77	Right-handed alpha
Helix 124	AN7	A	77	94	Right-handed alpha
Helix 125	AN8	A	96	98	Right-handed 310
Helix 126	AN9	A	105	117	Right-handed alpha
Helix 127	AO1	A	134	148	Right-handed alpha
Helix 128	AO2	A	164	182	Right-handed alpha
Helix 129	AO3	A	203	214	Right-handed alpha
Helix 130	AO4	A	232	237	Right-handed alpha
Helix 131	AO5	A	245	249	Right-handed alpha
Helix 132	AO6	A	261	266	Right-handed alpha
Helix 133	AO7	A	296	301	Right-handed alpha
Helix 134	AO8	A	310	315	Right-handed alpha
Helix 135	AO9	A	315	326	Right-handed alpha
Helix 136	AP1	A	330	353	Right-handed alpha
Helix 137	AP2	A	389	397	Right-handed alpha
Helix 138	AP3	A	403	405	Right-handed 310
Helix 139	AP4	A	406	421	Right-handed alpha
Helix 140	AP5	A	446	466	Right-handed alpha
Helix 141	AP6	B	27	34	Right-handed 310
Helix 142	AP7	B	52	69	Right-handed alpha
Helix 143	AP8	B	69	93	Right-handed alpha
Helix 144	AP9	B	96	98	Right-handed 310
Helix 145	AQ1	B	105	115	Right-handed alpha
Helix 146	AQ2	B	134	148	Right-handed alpha
Helix 147	AQ3	B	164	182	Right-handed alpha
Helix 148	AQ4	B	203	214	Right-handed alpha
Helix 149	AQ5	B	232	237	Right-handed alpha
Helix 150	AQ6	B	245	249	Right-handed alpha
Helix 151	AQ7	B	261	268	Right-handed 310
Helix 152	AQ8	B	296	302	Right-handed alpha
Helix 153	AQ9	B	310	315	Right-handed alpha
Helix 154	AR1	B	315	326	Right-handed alpha
Helix 155	AR2	B	329	353	Right-handed alpha
Helix 156	AR3	B	389	396	Right-handed alpha
Helix 157	AR4	B	406	421	Right-handed alpha
Helix 158	AR5	B	446	465	Right-handed alpha

There are 24 sheets in PDB entry 5V12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	103	first strand
Strand 2	E	256	259	anti-parallel
Strand 3	E	240	244	anti-parallel
Strand 4	E	217	221	parallel
Strand 5	E	185	192	parallel
Strand 6	E	125	130	parallel
Strand 7	E	153	157	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	373	first strand
Strand 2	E	434	440	anti-parallel
Strand 3	E	428	431	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	378	first strand
Strand 2	E	400	402	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	103	first strand
Strand 2	G	256	259	anti-parallel
Strand 3	G	240	244	anti-parallel
Strand 4	G	217	221	parallel
Strand 5	G	185	192	parallel
Strand 6	G	125	130	parallel
Strand 7	G	152	157	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	369	373	first strand
Strand 2	G	434	440	anti-parallel
Strand 3	G	428	431	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	376	378	first strand
Strand 2	G	400	402	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	103	first strand
Strand 2	F	256	259	anti-parallel
Strand 3	F	240	244	anti-parallel
Strand 4	F	217	221	parallel
Strand 5	F	185	192	parallel
Strand 6	F	125	130	parallel
Strand 7	F	152	157	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	373	first strand
Strand 2	F	435	440	anti-parallel
Strand 3	F	428	430	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	377	first strand
Strand 2	F	400	401	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	256	259	anti-parallel
Strand 3	H	240	244	anti-parallel
Strand 4	H	217	221	parallel
Strand 5	H	185	192	parallel
Strand 6	H	125	130	parallel
Strand 7	H	152	157	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	369	373	first strand
Strand 2	H	435	440	anti-parallel
Strand 3	H	428	430	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	376	378	first strand
Strand 2	H	400	402	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	256	259	anti-parallel
Strand 3	C	240	244	anti-parallel
Strand 4	C	217	221	parallel
Strand 5	C	185	192	parallel
Strand 6	C	125	130	parallel
Strand 7	C	152	157	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	200	201	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	373	first strand
Strand 2	C	435	440	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	378	first strand
Strand 2	C	400	402	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	256	259	anti-parallel
Strand 3	D	240	244	anti-parallel
Strand 4	D	217	221	parallel
Strand 5	D	185	192	parallel
Strand 6	D	125	130	parallel
Strand 7	D	152	157	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	373	first strand
Strand 2	D	434	440	anti-parallel
Strand 3	D	428	431	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	378	first strand
Strand 2	D	400	402	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	256	259	anti-parallel
Strand 3	A	240	244	anti-parallel
Strand 4	A	217	221	parallel
Strand 5	A	185	192	parallel
Strand 6	A	125	130	parallel
Strand 7	A	153	157	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	373	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	428	430	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	400	402	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	256	259	anti-parallel
Strand 3	B	240	244	anti-parallel
Strand 4	B	217	221	parallel
Strand 5	B	185	192	parallel
Strand 6	B	125	130	parallel
Strand 7	B	152	157	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	402	first strand
Strand 2	B	369	378	parallel
Strand 3	B	434	440	anti-parallel
Strand 4	B	428	430	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V12

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V12