Analysis of interatomic Contacts of Structural Units in PDB entry:
5V19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V19 entry

There are 2 chains in PDB entry 5V19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 671LYS 939
B
 LEU 670VAL 940
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5V19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
723 730Right-handed alpha
Helix 2
AA2
A
761 769Right-handed alpha
Helix 3
AA3
A
777 797Right-handed alpha
Helix 4
AA4
A
805 807Right-handed 310
Helix 5
AA5
A
842 846Right-handed 310
Helix 6
AA6
A
847 854Right-handed alpha
Helix 7
AA7
A
855 858Right-handed 310
Helix 8
AA8
A
859 877Right-handed alpha
Helix 9
AA9
A
890 898Right-handed alpha
Helix 10
AB1
A
908 918Right-handed alpha
Helix 11
AB2
A
928 935Right-handed alpha
Helix 12
AB3
A
936 939Right-handed 310
Helix 13
AB4
B
721 732Right-handed alpha
Helix 14
AB5
B
761 769Right-handed alpha
Helix 15
AB6
B
776 797Right-handed alpha
Helix 16
AB7
B
805 807Right-handed 310
Helix 17
AB8
B
842 846Right-handed 310
Helix 18
AB9
B
847 854Right-handed alpha
Helix 19
AC1
B
855 858Right-handed 310
Helix 20
AC2
B
859 877Right-handed alpha
Helix 21
AC3
B
881 885Right-handed 310
Helix 22
AC4
B
886 898Right-handed alpha
Helix 23
AC5
B
908 919Right-handed alpha
Helix 24
AC6
B
922 926Right-handed 310
Helix 25
AC7
B
928 935Right-handed alpha
Helix 26
AC8
B
936 939Right-handed 310
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There are 7 sheets in PDB entry 5V19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
685 688anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
705 712anti-parallel
Strand 4
A
749 755anti-parallel
Strand 5
A
740 746anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
827 828anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 811first strand
Strand 2
A
818 820anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
692 699anti-parallel
Strand 3
B
685 689anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
692 699anti-parallel
Strand 3
B
705 712anti-parallel
Strand 4
B
749 755anti-parallel
Strand 5
B
740 746anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 811first strand
Strand 2
B
818 820anti-parallel
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