Analysis of interatomic Contacts of Structural Units in PDB entry:
5V1D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V1D entry

There are 7 chains in PDB entry 5V1D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 104	SER 401
E	PRO 3	PRO 11
B	ARG 104	SER 401
C	SER 105	PHE 408
F	PRO 3	PRO 11
D	ARG 104	PHE 408
G	PRO 3	PRO 11

There are 3 helices in PDB entry 5V1D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	178	184	Right-handed alpha
Helix 2	AA2	C	178	183	Right-handed alpha
Helix 3	AA3	D	180	184	Right-handed 310

There are 21 sheets in PDB entry 5V1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	132	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	107	111	anti-parallel
Strand 4	A	340	345	anti-parallel
Strand 5	A	352	353	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	256	269	anti-parallel
Strand 3	A	237	249	anti-parallel
Strand 4	A	194	206	anti-parallel
Strand 5	D	194	207	anti-parallel
Strand 6	D	236	249	anti-parallel
Strand 7	D	256	270	anti-parallel
Strand 8	D	139	140	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	194	206	anti-parallel
Strand 4	D	194	207	anti-parallel
Strand 5	D	213	217	anti-parallel
Strand 6	D	222	224	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	319	323	anti-parallel
Strand 3	A	330	335	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	395	398	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	132	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	340	347	anti-parallel
Strand 5	B	350	353	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	256	270	anti-parallel
Strand 3	B	236	249	anti-parallel
Strand 4	B	194	207	anti-parallel
Strand 5	C	194	207	anti-parallel
Strand 6	C	236	249	anti-parallel
Strand 7	C	256	270	anti-parallel
Strand 8	C	139	140	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	194	207	anti-parallel
Strand 3	C	194	207	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	C	222	224	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	323	first strand
Strand 2	B	310	314	anti-parallel
Strand 3	B	356	357	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	395	397	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	116	119	anti-parallel
Strand 3	C	106	111	anti-parallel
Strand 4	C	340	347	anti-parallel
Strand 5	C	350	353	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	171	174	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	319	324	anti-parallel
Strand 4	C	330	335	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	356	359	parallel
Strand 4	C	402	406	parallel
Strand 5	C	377	380	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	399	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	F	8	9	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	115	119	anti-parallel
Strand 3	D	106	111	anti-parallel
Strand 4	D	340	346	anti-parallel
Strand 5	D	351	353	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	171	178	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	309	314	anti-parallel
Strand 3	D	319	324	anti-parallel
Strand 4	D	330	335	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	309	314	anti-parallel
Strand 3	D	356	359	parallel
Strand 4	D	402	406	parallel
Strand 5	D	377	380	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	387	392	anti-parallel
Strand 3	G	8	9	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V1D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V1D