Analysis of interatomic Contacts of Structural Units in PDB entry:
5V1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V1T entry

There are 2 chains in PDB entry 5V1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 439
B
 SER 2MET 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 5V1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 45Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
62 68Right-handed alpha
Helix 5
AA5
A
82 101Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
192 202Right-handed alpha
Helix 9
AA9
A
215 224Right-handed alpha
Helix 10
AB1
A
227 240Right-handed alpha
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
292 310Right-handed alpha
Helix 13
AB4
A
322 331Right-handed 310
Helix 14
AB5
A
340 345Right-handed alpha
Helix 15
AB6
A
365 371Right-handed 310
Helix 16
AB7
A
382 390Right-handed alpha
Helix 17
AB8
A
390 399Right-handed alpha
Helix 18
AB9
A
403 408Right-handed alpha
Helix 19
AC1
A
411 416Right-handed alpha
Helix 20
AC2
A
419 424Right-handed alpha
Helix 21
AC3
B
3 12Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5V1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
27 30anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
272 277parallel
Strand 3
A
245 250parallel
Strand 4
A
205 210parallel
Strand 5
A
182 186parallel
Strand 6
A
154 157parallel
Strand 7
A
108 111parallel
Strand 8
A
353 356parallel
Strand 9
A
362 363anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il