Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V2D entry

There are 3 chains in PDB entry 5V2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU -6	GLY 481
B	SER -1	GLY 481
C	SER 2	ALA 288

There are 41 helices in PDB entry 5V2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-6	-2	Right-handed 310
Helix 2	AA2	A	8	11	Right-handed 310
Helix 3	AA3	A	12	17	Right-handed alpha
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	86	96	Right-handed alpha
Helix 6	AA6	A	105	109	Right-handed 310
Helix 7	AA7	A	238	244	Right-handed alpha
Helix 8	AA8	A	267	271	Right-handed 310
Helix 9	AA9	A	319	323	Right-handed 310
Helix 10	AB1	A	357	361	Right-handed 310
Helix 11	AB2	A	380	384	Right-handed 310
Helix 12	AB3	B	8	11	Right-handed 310
Helix 13	AB4	B	12	17	Right-handed alpha
Helix 14	AB5	B	59	63	Right-handed 310
Helix 15	AB6	B	86	96	Right-handed alpha
Helix 16	AB7	B	105	109	Right-handed 310
Helix 17	AB8	B	238	244	Right-handed alpha
Helix 18	AB9	B	267	271	Right-handed 310
Helix 19	AC1	B	319	323	Right-handed 310
Helix 20	AC2	B	357	361	Right-handed 310
Helix 21	AC3	B	380	384	Right-handed 310
Helix 22	AC4	C	8	11	Right-handed 310
Helix 23	AC5	C	12	17	Right-handed alpha
Helix 24	AC6	C	59	63	Right-handed 310
Helix 25	AC7	C	86	96	Right-handed alpha
Helix 26	AC8	C	105	109	Right-handed 310
Helix 27	AC9	C	238	244	Right-handed alpha
Helix 28	AD1	C	267	271	Right-handed 310
Helix 29	AD2	C	319	323	Right-handed 310
Helix 30	AD3	C	357	361	Right-handed 310
Helix 31	AD4	C	380	384	Right-handed 310
Helix 32	AD5	D	8	11	Right-handed 310
Helix 33	AD6	D	12	17	Right-handed alpha
Helix 34	AD7	D	59	63	Right-handed 310
Helix 35	AD8	D	86	96	Right-handed alpha
Helix 36	AD9	D	105	109	Right-handed 310
Helix 37	AE1	D	238	244	Right-handed alpha
Helix 38	AE2	D	267	271	Right-handed 310
Helix 39	AE3	D	319	323	Right-handed 310
Helix 40	AE4	D	357	361	Right-handed 310
Helix 41	AE5	D	380	384	Right-handed 310

There are 39 sheets in PDB entry 5V2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	65	73	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	22	25	anti-parallel
Strand 6	B	22	25	anti-parallel
Strand 7	B	76	83	anti-parallel
Strand 8	B	65	73	anti-parallel
Strand 9	B	39	47	anti-parallel
Strand 10	B	476	480	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	462	466	anti-parallel
Strand 3	A	445	452	anti-parallel
Strand 4	A	432	440	anti-parallel
Strand 5	A	413	415	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	462	466	anti-parallel
Strand 3	A	445	452	anti-parallel
Strand 4	A	432	440	anti-parallel
Strand 5	A	419	422	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	141	143	anti-parallel
Strand 4	A	150	153	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	178	183	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	204	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	256	263	anti-parallel
Strand 4	A	272	278	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	249	251	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	294	302	anti-parallel
Strand 3	A	287	291	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	294	302	anti-parallel
Strand 3	A	325	333	anti-parallel
Strand 4	A	344	345	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	393	398	anti-parallel
Strand 4	A	404	407	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	462	466	anti-parallel
Strand 3	B	445	452	anti-parallel
Strand 4	B	432	440	anti-parallel
Strand 5	B	413	415	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	462	466	anti-parallel
Strand 3	B	445	452	anti-parallel
Strand 4	B	432	440	anti-parallel
Strand 5	B	419	422	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	141	143	anti-parallel
Strand 4	B	150	153	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	178	183	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	204	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	256	263	anti-parallel
Strand 4	B	272	278	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	249	251	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	294	302	anti-parallel
Strand 3	B	287	291	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	294	302	anti-parallel
Strand 3	B	325	333	anti-parallel
Strand 4	B	344	345	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	393	398	anti-parallel
Strand 4	B	404	407	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	76	83	anti-parallel
Strand 3	C	65	73	anti-parallel
Strand 4	C	40	47	anti-parallel
Strand 5	C	476	480	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	462	466	anti-parallel
Strand 3	C	445	452	anti-parallel
Strand 4	C	432	440	anti-parallel
Strand 5	C	413	415	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	462	466	anti-parallel
Strand 3	C	445	452	anti-parallel
Strand 4	C	432	440	anti-parallel
Strand 5	C	419	422	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	141	143	anti-parallel
Strand 4	C	150	153	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	178	183	anti-parallel
Strand 3	C	192	198	anti-parallel
Strand 4	C	204	211	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	256	263	anti-parallel
Strand 4	C	272	278	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	249	251	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	294	302	anti-parallel
Strand 3	C	287	291	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	294	302	anti-parallel
Strand 3	C	325	333	anti-parallel
Strand 4	C	344	345	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	393	398	anti-parallel
Strand 4	C	404	407	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	76	83	anti-parallel
Strand 3	D	65	73	anti-parallel
Strand 4	D	40	47	anti-parallel
Strand 5	D	476	480	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	462	466	anti-parallel
Strand 3	D	445	452	anti-parallel
Strand 4	D	432	440	anti-parallel
Strand 5	D	413	415	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	462	466	anti-parallel
Strand 3	D	445	452	anti-parallel
Strand 4	D	432	440	anti-parallel
Strand 5	D	419	422	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	130	134	anti-parallel
Strand 3	D	141	143	anti-parallel
Strand 4	D	150	153	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	178	183	anti-parallel
Strand 3	D	192	198	anti-parallel
Strand 4	D	204	211	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	227	232	anti-parallel
Strand 3	D	256	263	anti-parallel
Strand 4	D	272	278	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	249	251	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	294	302	anti-parallel
Strand 3	D	287	291	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	294	302	anti-parallel
Strand 3	D	325	333	anti-parallel
Strand 4	D	344	345	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	355	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	393	398	anti-parallel
Strand 4	D	404	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2D