Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V2J entry

There are 2 chains in PDB entry 5V2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLN 447
B
 LYS 4GLN 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5V2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 32Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
75 98Right-handed alpha
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
135 148Right-handed alpha
Helix 7
AA7
A
163 167Right-handed 310
Helix 8
AA8
A
168 173Right-handed alpha
Helix 9
AA9
A
177 186Right-handed alpha
Helix 10
AB1
A
187 189Right-handed 310
Helix 11
AB2
A
190 194Right-handed 310
Helix 12
AB3
A
202 205Right-handed 310
Helix 13
AB4
A
206 217Right-handed alpha
Helix 14
AB5
A
227 231Right-handed 310
Helix 15
AB6
A
252 260Right-handed alpha
Helix 16
AB7
A
278 290Right-handed alpha
Helix 17
AB8
A
299 306Right-handed 310
Helix 18
AB9
A
310 314Right-handed 310
Helix 19
AC1
A
326 333Right-handed alpha
Helix 20
AC2
A
344 355Right-handed alpha
Helix 21
AC3
A
366 377Right-handed alpha
Helix 22
AC4
A
394 407Right-handed alpha
Helix 23
AC5
A
408 419Right-handed alpha
Helix 24
AC6
A
419 430Right-handed alpha
Helix 25
AC7
A
433 447Right-handed alpha
Helix 26
AC8
B
15 32Right-handed alpha
Helix 27
AC9
B
42 48Right-handed alpha
Helix 28
AD1
B
68 73Right-handed 310
Helix 29
AD2
B
75 101Right-handed alpha
Helix 30
AD3
B
115 124Right-handed alpha
Helix 31
AD4
B
135 147Right-handed alpha
Helix 32
AD5
B
163 167Right-handed 310
Helix 33
AD6
B
168 173Right-handed alpha
Helix 34
AD7
B
177 187Right-handed alpha
Helix 35
AD8
B
188 189Right-handed 310
Helix 36
AD9
B
190 194Right-handed 310
Helix 37
AE1
B
202 205Right-handed 310
Helix 38
AE2
B
206 215Right-handed alpha
Helix 39
AE3
B
227 231Right-handed 310
Helix 40
AE4
B
250 260Right-handed alpha
Helix 41
AE5
B
278 290Right-handed alpha
Helix 42
AE6
B
299 306Right-handed 310
Helix 43
AE7
B
309 313Right-handed 310
Helix 44
AE8
B
326 332Right-handed alpha
Helix 45
AE9
B
344 355Right-handed alpha
Helix 46
AF1
B
366 377Right-handed alpha
Helix 47
AF2
B
394 407Right-handed alpha
Helix 48
AF3
B
410 420Right-handed alpha
Helix 49
AF4
B
420 430Right-handed alpha
Helix 50
AF5
B
433 447Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5V2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
35 41parallel
Strand 3
A
7 11parallel
Strand 4
A
107 111parallel
Strand 5
A
127 132parallel
Strand 6
A
198 199parallel
Strand 7
A
220 221parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
293 297parallel
Strand 3
A
266 270parallel
Strand 4
A
336 341parallel
Strand 5
A
358 360parallel
Strand 6
A
381 383parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
35 41parallel
Strand 3
B
7 11parallel
Strand 4
B
107 111parallel
Strand 5
B
127 132parallel
Strand 6
B
197 199parallel
Strand 7
B
219 221parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 322first strand
Strand 2
B
294 297parallel
Strand 3
B
266 270parallel
Strand 4
B
336 341parallel
Strand 5
B
358 360parallel
Strand 6
B
381 383parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il