Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V2Q entry

There are 2 chains in PDB entry 5V2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 90THR 476
B
 ALA 427GLU 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5V2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 107Right-handed alpha
Helix 2
AA2
A
124 128Right-handed 310
Helix 3
AA3
A
171 187Right-handed alpha
Helix 4
AA4
A
290 308Right-handed alpha
Helix 5
AA5
A
320 324Right-handed 310
Helix 6
AA6
A
343 362Right-handed alpha
Helix 7
AA7
A
376 380Right-handed 310
Helix 8
AA8
A
396 407Right-handed alpha
Helix 9
AA9
A
408 413Right-handed alpha
Helix 10
AB1
A
414 428Right-handed alpha
Helix 11
AB2
A
429 434Right-handed alpha
Helix 12
AB3
A
442 462Right-handed alpha
Helix 13
AB4
A
463 467Right-handed 310
Helix 14
AB5
B
428 444Right-handed alpha
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There are 2 sheets in PDB entry 5V2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
143 151anti-parallel
Strand 4
A
113 117anti-parallel
Strand 5
A
271 274anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 317first strand
Strand 2
A
366 371parallel
Strand 3
A
280 283parallel
Strand 4
A
388 392parallel
Strand 5
A
436 438parallel
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