Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V2S entry

There is 1 chain in PDB entry 5V2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 104LYS 865
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5V2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 200Right-handed alpha
Helix 2
AA2
A
225 227Right-handed 310
Helix 3
AA3
A
306 310Right-handed 310
Helix 4
AA4
A
358 363Right-handed alpha
Helix 5
AA5
A
403 407Right-handed 310
Helix 6
AA6
A
410 429Right-handed alpha
Helix 7
AA7
A
460 462Right-handed 310
Helix 8
AA8
A
463 473Right-handed alpha
Helix 9
AA9
A
501 546Right-handed alpha
Helix 10
AB1
A
546 556Right-handed alpha
Helix 11
AB2
A
577 579Right-handed 310
Helix 12
AB3
A
662 664Right-handed 310
Helix 13
AB4
A
690 696Right-handed alpha
Helix 14
AB5
A
701 710Right-handed alpha
Helix 15
AB6
A
711 717Right-handed alpha
Helix 16
AB7
A
754 770Right-handed alpha
Helix 17
AB8
A
776 802Right-handed alpha
Helix 18
AB9
A
804 810Right-handed alpha
Helix 19
AC1
A
811 815Right-handed 310
Helix 20
AC2
A
836 865Right-handed alpha
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There are 11 sheets in PDB entry 5V2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
574 576anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
567 572anti-parallel
Strand 3
A
559 564anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
383 388anti-parallel
Strand 3
A
366 380anti-parallel
Strand 4
A
143 152anti-parallel
Strand 5
A
448 457anti-parallel
Strand 6
A
433 435anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
383 388anti-parallel
Strand 3
A
366 380anti-parallel
Strand 4
A
143 152anti-parallel
Strand 5
A
448 457anti-parallel
Strand 6
A
440 444anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 191first strand
Strand 2
A
157 175anti-parallel
Strand 3
A
263 280anti-parallel
Strand 4
A
288 289anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
246 248anti-parallel
Strand 3
A
263 280anti-parallel
Strand 4
A
157 175anti-parallel
Strand 5
A
351 355anti-parallel
Strand 6
A
342 346anti-parallel
Strand 7
A
319 322anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
220 223anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 583first strand
Strand 2
A
601 604anti-parallel
Strand 3
A
613 617anti-parallel
Strand 4
A
623 624anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
630 632anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 643first strand
Strand 2
A
646 651anti-parallel
Strand 3
A
654 660anti-parallel
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