Analysis of interatomic Contacts of Structural Units in PDB entry:
5V2X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V2X entry

There are 2 chains in PDB entry 5V2X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 343
B
 SER -1SER 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5V2X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 34Right-handed alpha
Helix 2
AA2
A
41 60Right-handed alpha
Helix 3
AA3
A
62 68Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
123 152Right-handed alpha
Helix 6
AA6
A
252 259Right-handed alpha
Helix 7
AA7
A
306 318Right-handed alpha
Helix 8
AA8
A
321 331Right-handed alpha
Helix 9
AA9
A
333 343Right-handed alpha
Helix 10
AB1
B
16 34Right-handed alpha
Helix 11
AB2
B
41 60Right-handed alpha
Helix 12
AB3
B
62 68Right-handed alpha
Helix 13
AB4
B
106 111Right-handed alpha
Helix 14
AB5
B
123 152Right-handed alpha
Helix 15
AB6
B
252 259Right-handed alpha
Helix 16
AB7
B
306 318Right-handed alpha
Helix 17
AB8
B
321 331Right-handed alpha
Helix 18
AB9
B
333 343Right-handed alpha
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There are 8 sheets in PDB entry 5V2X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
36 39parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
195 200anti-parallel
Strand 5
A
277 284anti-parallel
Strand 6
A
169 175anti-parallel
Strand 7
A
94 98anti-parallel
Strand 8
A
77 79anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
89 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
206 208anti-parallel
Strand 4
A
238 239anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
304 305anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
36 39parallel
Strand 3
B
246 251anti-parallel
Strand 4
B
195 200anti-parallel
Strand 5
B
277 284anti-parallel
Strand 6
B
169 175anti-parallel
Strand 7
B
94 98anti-parallel
Strand 8
B
77 79anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
89 90anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 189first strand
Strand 2
B
268 271anti-parallel
Strand 3
B
206 208anti-parallel
Strand 4
B
238 239anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
304 305anti-parallel
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