Analysis of interatomic Contacts of Structural Units in PDB entry:
5V33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V33 entry

There are 3 chains in PDB entry 5V33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 11	SER 250
L	ALA 1	GLY 281
M	ALA 1	GLY 302

There are 40 helices in PDB entry 5V33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	11	35	Right-handed alpha
Helix 2	AA2	H	103	108	Right-handed alpha
Helix 3	AA3	H	109	113	Right-handed 310
Helix 4	AA4	H	135	137	Right-handed 310
Helix 5	AA5	H	194	196	Right-handed 310
Helix 6	AA6	H	212	216	Right-handed 310
Helix 7	AA7	H	226	244	Right-handed alpha
Helix 8	AA8	L	6	10	Right-handed 310
Helix 9	AA9	L	32	57	Right-handed alpha
Helix 10	AB1	L	70	74	Right-handed 310
Helix 11	AB2	L	79	82	Right-handed 310
Helix 12	AB3	L	83	112	Right-handed alpha
Helix 13	AB4	L	115	133	Right-handed alpha
Helix 14	AB5	L	133	140	Right-handed alpha
Helix 15	AB6	L	141	145	Right-handed 310
Helix 16	AB7	L	151	164	Right-handed alpha
Helix 17	AB8	L	165	169	Right-handed 310
Helix 18	AB9	L	170	199	Right-handed alpha
Helix 19	AC1	L	208	220	Right-handed alpha
Helix 20	AC2	L	225	250	Right-handed alpha
Helix 21	AC3	L	258	262	Right-handed 310
Helix 22	AC4	L	263	268	Right-handed alpha
Helix 23	AC5	M	25	29	Right-handed 310
Helix 24	AC6	M	36	41	Right-handed alpha
Helix 25	AC7	M	52	78	Right-handed alpha
Helix 26	AC8	M	81	88	Right-handed alpha
Helix 27	AC9	M	98	102	Right-handed 310
Helix 28	AD1	M	108	111	Right-handed 310
Helix 29	AD2	M	112	140	Right-handed alpha
Helix 30	AD3	M	144	162	Right-handed alpha
Helix 31	AD4	M	162	169	Right-handed alpha
Helix 32	AD5	M	170	174	Right-handed 310
Helix 33	AD6	M	180	193	Right-handed alpha
Helix 34	AD7	M	195	198	Right-handed 310
Helix 35	AD8	M	199	227	Right-handed alpha
Helix 36	AD9	M	228	230	Right-handed 310
Helix 37	AE1	M	233	240	Right-handed alpha
Helix 38	AE2	M	242	257	Right-handed alpha
Helix 39	AE3	M	263	287	Right-handed alpha
Helix 40	AE4	M	293	300	Right-handed alpha

There are 7 sheets in PDB entry 5V33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	65	first strand
Strand 2	H	72	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	98	100	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	175	182	anti-parallel
Strand 4	H	188	192	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	152	154	anti-parallel
Strand 4	H	203	204	parallel
Strand 5	H	197	198	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	144	first strand
Strand 2	M	11	13	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	29	30	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	66	first strand
Strand 2	L	148	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V33

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V33