Analysis of interatomic Contacts of Structural Units in PDB entry:
5V36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V36 entry

There are 2 chains in PDB entry 5V36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	ARG 450
B	ALA 0	ARG 450

There are 36 helices in PDB entry 5V36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	39	46	Right-handed alpha
Helix 3	AA3	A	46	66	Right-handed alpha
Helix 4	AA4	A	67	70	Right-handed 310
Helix 5	AA5	A	80	107	Right-handed alpha
Helix 6	AA6	A	150	154	Right-handed 310
Helix 7	AA7	A	156	163	Right-handed alpha
Helix 8	AA8	A	176	189	Right-handed alpha
Helix 9	AA9	A	207	221	Right-handed alpha
Helix 10	AB1	A	271	276	Right-handed 310
Helix 11	AB2	A	302	306	Right-handed 310
Helix 12	AB3	A	310	327	Right-handed alpha
Helix 13	AB4	A	355	364	Right-handed alpha
Helix 14	AB5	A	377	382	Right-handed alpha
Helix 15	AB6	A	411	414	Right-handed 310
Helix 16	AB7	A	415	425	Right-handed alpha
Helix 17	AB8	A	428	434	Right-handed alpha
Helix 18	AB9	A	442	448	Right-handed 310
Helix 19	AC1	B	13	26	Right-handed alpha
Helix 20	AC2	B	39	46	Right-handed alpha
Helix 21	AC3	B	46	66	Right-handed alpha
Helix 22	AC4	B	67	70	Right-handed 310
Helix 23	AC5	B	80	107	Right-handed alpha
Helix 24	AC6	B	150	154	Right-handed 310
Helix 25	AC7	B	156	163	Right-handed alpha
Helix 26	AC8	B	176	189	Right-handed alpha
Helix 27	AC9	B	207	221	Right-handed alpha
Helix 28	AD1	B	271	276	Right-handed 310
Helix 29	AD2	B	302	306	Right-handed 310
Helix 30	AD3	B	310	327	Right-handed alpha
Helix 31	AD4	B	355	364	Right-handed alpha
Helix 32	AD5	B	377	382	Right-handed alpha
Helix 33	AD6	B	411	414	Right-handed 310
Helix 34	AD7	B	415	425	Right-handed alpha
Helix 35	AD8	B	428	434	Right-handed alpha
Helix 36	AD9	B	442	447	Right-handed 310

There are 13 sheets in PDB entry 5V36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	128	131	parallel
Strand 3	A	122	125	anti-parallel
Strand 4	A	116	119	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	30	33	parallel
Strand 3	A	7	10	parallel
Strand 4	A	135	137	parallel
Strand 5	A	298	300	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	B	72	79	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	263	265	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	192	196	parallel
Strand 3	A	169	173	parallel
Strand 4	A	256	259	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	236	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	251	254	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	349	353	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	388	396	anti-parallel
Strand 5	A	368	376	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	128	131	parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	116	119	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	30	33	parallel
Strand 3	B	7	10	parallel
Strand 4	B	135	137	parallel
Strand 5	B	298	300	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	263	265	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	192	196	parallel
Strand 3	B	169	173	parallel
Strand 4	B	256	259	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	236	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	251	254	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	349	353	anti-parallel
Strand 3	B	401	408	anti-parallel
Strand 4	B	388	396	anti-parallel
Strand 5	B	368	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V36

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V36