Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V3B entry

There are 12 chains in PDB entry 5V3B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ASN 102
A	LEU 104	GLN 357
B	VAL 5	ASN 102
B	LEU 104	TRP 356
C	VAL 5	ASN 102
C	LEU 104	GLU 358
D	VAL 5	ASN 102
D	LEU 104	GLU 358
E	GLN 4	ASN 102
E	LEU 104	TRP 356
F	LEU 6	ASN 102
F	LEU 104	ASN 359

There are 90 helices in PDB entry 5V3B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	14	29	Right-handed alpha
Helix 3	AA3	A	42	46	Right-handed 310
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	70	80	Right-handed alpha
Helix 6	AA6	A	102	114	Right-handed alpha
Helix 7	AA7	A	120	133	Right-handed alpha
Helix 8	AA8	A	135	149	Right-handed alpha
Helix 9	AA9	A	163	176	Right-handed alpha
Helix 10	AB1	A	192	204	Right-handed alpha
Helix 11	AB2	A	239	243	Right-handed 310
Helix 12	AB3	A	292	298	Right-handed alpha
Helix 13	AB4	A	298	307	Right-handed alpha
Helix 14	AB5	A	336	339	Right-handed 310
Helix 15	AB6	A	340	357	Right-handed alpha
Helix 16	AB7	B	9	13	Right-handed 310
Helix 17	AB8	B	14	28	Right-handed alpha
Helix 18	AB9	B	42	46	Right-handed 310
Helix 19	AC1	B	57	69	Right-handed alpha
Helix 20	AC2	B	70	80	Right-handed alpha
Helix 21	AC3	B	102	114	Right-handed alpha
Helix 22	AC4	B	120	133	Right-handed alpha
Helix 23	AC5	B	135	149	Right-handed alpha
Helix 24	AC6	B	160	176	Right-handed alpha
Helix 25	AC7	B	192	204	Right-handed alpha
Helix 26	AC8	B	239	243	Right-handed 310
Helix 27	AC9	B	292	298	Right-handed alpha
Helix 28	AD1	B	298	307	Right-handed alpha
Helix 29	AD2	B	336	339	Right-handed 310
Helix 30	AD3	B	340	356	Right-handed alpha
Helix 31	AD4	C	9	13	Right-handed 310
Helix 32	AD5	C	14	29	Right-handed alpha
Helix 33	AD6	C	42	46	Right-handed 310
Helix 34	AD7	C	57	69	Right-handed alpha
Helix 35	AD8	C	70	80	Right-handed alpha
Helix 36	AD9	C	102	114	Right-handed alpha
Helix 37	AE1	C	120	133	Right-handed alpha
Helix 38	AE2	C	135	149	Right-handed alpha
Helix 39	AE3	C	163	176	Right-handed alpha
Helix 40	AE4	C	192	204	Right-handed alpha
Helix 41	AE5	C	239	243	Right-handed 310
Helix 42	AE6	C	292	298	Right-handed alpha
Helix 43	AE7	C	298	307	Right-handed alpha
Helix 44	AE8	C	336	339	Right-handed 310
Helix 45	AE9	C	340	356	Right-handed alpha
Helix 46	AF1	D	9	13	Right-handed 310
Helix 47	AF2	D	14	29	Right-handed alpha
Helix 48	AF3	D	42	46	Right-handed 310
Helix 49	AF4	D	57	69	Right-handed alpha
Helix 50	AF5	D	70	80	Right-handed alpha
Helix 51	AF6	D	102	114	Right-handed alpha
Helix 52	AF7	D	120	133	Right-handed alpha
Helix 53	AF8	D	135	149	Right-handed alpha
Helix 54	AF9	D	164	176	Right-handed alpha
Helix 55	AG1	D	192	204	Right-handed alpha
Helix 56	AG2	D	239	243	Right-handed 310
Helix 57	AG3	D	292	298	Right-handed alpha
Helix 58	AG4	D	298	307	Right-handed alpha
Helix 59	AG5	D	336	339	Right-handed 310
Helix 60	AG6	D	340	358	Right-handed alpha
Helix 61	AG7	E	9	13	Right-handed 310
Helix 62	AG8	E	14	29	Right-handed alpha
Helix 63	AG9	E	42	46	Right-handed 310
Helix 64	AH1	E	57	69	Right-handed alpha
Helix 65	AH2	E	70	80	Right-handed alpha
Helix 66	AH3	E	102	114	Right-handed alpha
Helix 67	AH4	E	120	133	Right-handed alpha
Helix 68	AH5	E	135	150	Right-handed alpha
Helix 69	AH6	E	162	176	Right-handed alpha
Helix 70	AH7	E	192	204	Right-handed alpha
Helix 71	AH8	E	239	243	Right-handed 310
Helix 72	AH9	E	292	298	Right-handed alpha
Helix 73	AI1	E	298	307	Right-handed alpha
Helix 74	AI2	E	336	339	Right-handed 310
Helix 75	AI3	E	340	356	Right-handed alpha
Helix 76	AI4	F	9	13	Right-handed 310
Helix 77	AI5	F	14	29	Right-handed alpha
Helix 78	AI6	F	42	46	Right-handed 310
Helix 79	AI7	F	57	69	Right-handed alpha
Helix 80	AI8	F	70	80	Right-handed alpha
Helix 81	AI9	F	102	114	Right-handed alpha
Helix 82	AJ1	F	120	132	Right-handed alpha
Helix 83	AJ2	F	135	149	Right-handed alpha
Helix 84	AJ3	F	163	176	Right-handed alpha
Helix 85	AJ4	F	192	204	Right-handed alpha
Helix 86	AJ5	F	239	243	Right-handed 310
Helix 87	AJ6	F	292	298	Right-handed alpha
Helix 88	AJ7	F	298	307	Right-handed alpha
Helix 89	AJ8	F	336	339	Right-handed 310
Helix 90	AJ9	F	340	358	Right-handed alpha

There are 18 sheets in PDB entry 5V3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	248	253	anti-parallel
Strand 4	A	207	210	parallel
Strand 5	A	231	233	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	309	314	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	39	40	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	256	262	anti-parallel
Strand 3	B	248	253	anti-parallel
Strand 4	B	207	210	parallel
Strand 5	B	231	233	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	309	314	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	282	285	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	256	262	anti-parallel
Strand 3	C	248	253	anti-parallel
Strand 4	C	207	211	parallel
Strand 5	C	231	233	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	325	329	anti-parallel
Strand 3	C	309	312	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	279	first strand
Strand 2	C	282	285	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	256	262	anti-parallel
Strand 3	D	248	253	anti-parallel
Strand 4	D	207	210	parallel
Strand 5	D	231	233	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	322	329	anti-parallel
Strand 3	D	309	315	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	277	first strand
Strand 2	D	284	285	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	256	262	anti-parallel
Strand 3	E	248	253	anti-parallel
Strand 4	E	207	210	parallel
Strand 5	E	231	233	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	274	first strand
Strand 2	E	323	329	anti-parallel
Strand 3	E	309	314	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	277	first strand
Strand 2	E	284	285	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	256	262	anti-parallel
Strand 3	F	248	253	anti-parallel
Strand 4	F	207	209	parallel
Strand 5	F	231	233	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	323	329	anti-parallel
Strand 3	F	309	314	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	277	first strand
Strand 2	F	284	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V3B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3B