Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V3G entry

There are 7 chains in PDB entry 5V3G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	T 1	C 21
F	A -19	C 1
D	PRO 713	THR 882
B	T 1	C 21
C	A 1	C 21
A	SER 715	THR 882
G	GLU 716	HIS 741

There are 16 helices in PDB entry 5V3G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	730	742	Right-handed alpha
Helix 2	AA2	D	758	771	Right-handed alpha
Helix 3	AA3	D	786	799	Right-handed alpha
Helix 4	AA4	D	814	827	Right-handed alpha
Helix 5	AA5	D	842	854	Right-handed alpha
Helix 6	AA6	D	870	879	Right-handed alpha
Helix 7	AA7	A	730	742	Right-handed alpha
Helix 8	AA8	A	758	771	Right-handed alpha
Helix 9	AA9	A	786	794	Right-handed alpha
Helix 10	AB1	A	794	799	Right-handed alpha
Helix 11	AB2	A	814	822	Right-handed alpha
Helix 12	AB3	A	822	827	Right-handed alpha
Helix 13	AB4	A	842	855	Right-handed alpha
Helix 14	AB5	A	870	879	Right-handed alpha
Helix 15	AB6	A	880	882	Right-handed 310
Helix 16	AB7	G	730	740	Right-handed alpha

There are 12 sheets in PDB entry 5V3G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	720	first strand
Strand 2	D	727	728	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	747	748	first strand
Strand 2	D	755	756	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	776	first strand
Strand 2	D	783	784	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	803	804	first strand
Strand 2	D	811	812	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	831	832	first strand
Strand 2	D	839	840	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	860	first strand
Strand 2	D	867	868	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	727	728	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	748	first strand
Strand 2	A	755	756	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	776	first strand
Strand 2	A	783	784	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	811	812	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	860	first strand
Strand 2	A	867	868	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	719	720	first strand
Strand 2	G	727	728	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V3G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3G