Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5V3J entry

There are 6 chains in PDB entry 5V3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 26
B	G 1	C 26
C	G 1	C 26
D	G 1	C 26
E	PRO 362	THR 638
F	PRO 362	GLY 639

There are 25 helices in PDB entry 5V3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	374	388	Right-handed alpha
Helix 2	AA2	E	402	411	Right-handed alpha
Helix 3	AA3	E	412	414	Right-handed 310
Helix 4	AA4	E	430	443	Right-handed alpha
Helix 5	AA5	E	458	467	Right-handed alpha
Helix 6	AA6	E	486	499	Right-handed alpha
Helix 7	AA7	E	514	522	Right-handed alpha
Helix 8	AA8	E	522	527	Right-handed alpha
Helix 9	AA9	E	542	555	Right-handed alpha
Helix 10	AB1	E	570	583	Right-handed alpha
Helix 11	AB2	E	598	611	Right-handed alpha
Helix 12	AB3	E	626	638	Right-handed alpha
Helix 13	AB4	F	374	383	Right-handed alpha
Helix 14	AB5	F	384	387	Right-handed 310
Helix 15	AB6	F	402	411	Right-handed alpha
Helix 16	AB7	F	412	414	Right-handed 310
Helix 17	AB8	F	430	443	Right-handed alpha
Helix 18	AB9	F	458	467	Right-handed alpha
Helix 19	AC1	F	486	499	Right-handed alpha
Helix 20	AC2	F	514	522	Right-handed alpha
Helix 21	AC3	F	522	527	Right-handed alpha
Helix 22	AC4	F	542	555	Right-handed alpha
Helix 23	AC5	F	570	583	Right-handed alpha
Helix 24	AC6	F	598	611	Right-handed alpha
Helix 25	AC7	F	627	639	Right-handed alpha

There are 19 sheets in PDB entry 5V3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	391	392	first strand
Strand 2	E	399	400	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	420	first strand
Strand 2	E	427	428	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	447	448	first strand
Strand 2	E	455	456	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	476	first strand
Strand 2	E	483	484	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	503	504	first strand
Strand 2	E	511	512	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	531	532	first strand
Strand 2	E	539	540	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	560	first strand
Strand 2	E	567	568	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	587	588	first strand
Strand 2	E	595	596	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	615	616	first strand
Strand 2	E	623	624	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	364	first strand
Strand 2	F	371	372	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	391	392	first strand
Strand 2	F	399	400	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	427	428	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	447	448	first strand
Strand 2	F	455	456	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	475	476	first strand
Strand 2	F	483	484	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	503	504	first strand
Strand 2	F	511	512	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	531	532	first strand
Strand 2	F	539	540	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	559	560	first strand
Strand 2	F	567	568	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	587	588	first strand
Strand 2	F	595	596	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	615	616	first strand
Strand 2	F	623	624	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5V3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3J