Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V3R entry

There are 2 chains in PDB entry 5V3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 358
B
 GLU 221THR 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5V3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
36 55Right-handed alpha
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
115 137Right-handed alpha
Helix 5
AA5
A
142 171Right-handed alpha
Helix 6
AA6
A
180 206Right-handed alpha
Helix 7
AA7
A
209 231Right-handed alpha
Helix 8
AA8
A
240 267Right-handed alpha
Helix 9
AA9
A
269 291Right-handed alpha
Helix 10
AB1
A
297 318Right-handed alpha
Helix 11
AB2
A
325 329Right-handed 310
Helix 12
AB3
B
222 233Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5V3R.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
110 113anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il