Analysis of interatomic Contacts of Structural Units in PDB entry:
5V3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V3W entry

There are 2 chains in PDB entry 5V3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1451THR 1727
B
 GLN 1451ARG 1726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5V3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1480 1483Right-handed 310
Helix 2
AA2
A
1484 1490Right-handed alpha
Helix 3
AA3
A
1506 1523Right-handed alpha
Helix 4
AA4
A
1533 1549Right-handed alpha
Helix 5
AA5
A
1571 1591Right-handed alpha
Helix 6
AA6
A
1598 1604Right-handed alpha
Helix 7
AA7
A
1606 1620Right-handed alpha
Helix 8
AA8
A
1626 1643Right-handed alpha
Helix 9
AA9
A
1644 1646Right-handed 310
Helix 10
AB1
A
1664 1671Right-handed alpha
Helix 11
AB2
A
1672 1676Right-handed 310
Helix 12
AB3
A
1698 1702Right-handed 310
Helix 13
AB4
A
1707 1727Right-handed alpha
Helix 14
AB5
B
1480 1483Right-handed 310
Helix 15
AB6
B
1484 1490Right-handed alpha
Helix 16
AB7
B
1506 1523Right-handed alpha
Helix 17
AB8
B
1533 1549Right-handed alpha
Helix 18
AB9
B
1571 1588Right-handed alpha
Helix 19
AC1
B
1598 1603Right-handed alpha
Helix 20
AC2
B
1606 1621Right-handed alpha
Helix 21
AC3
B
1626 1643Right-handed alpha
Helix 22
AC4
B
1644 1646Right-handed 310
Helix 23
AC5
B
1664 1671Right-handed alpha
Helix 24
AC6
B
1672 1676Right-handed 310
Helix 25
AC7
B
1698 1702Right-handed 310
Helix 26
AC8
B
1706 1726Right-handed alpha
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There are 2 sheets in PDB entry 5V3W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1452 1453first strand
Strand 2
A
1456 1460anti-parallel
Strand 3
A
1497 1500anti-parallel
Strand 4
A
1471 1474parallel
Strand 5
A
1527 1532parallel
Strand 6
A
1553 1559parallel
Strand 7
A
1655 1659parallel
Strand 8
A
1690 1694parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1452 1453first strand
Strand 2
B
1456 1460anti-parallel
Strand 3
B
1497 1500anti-parallel
Strand 4
B
1471 1474parallel
Strand 5
B
1527 1532parallel
Strand 6
B
1553 1559parallel
Strand 7
B
1655 1659parallel
Strand 8
B
1690 1694parallel
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