Analysis of interatomic Contacts of Structural Units in PDB entry:
5V44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V44 entry

There are 3 chains in PDB entry 5V44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 94SER 335
B
 SER 88SER 335
C
 GLY 84SER 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5V44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 107Right-handed alpha
Helix 2
AA2
A
111 124Right-handed alpha
Helix 3
AA3
A
145 152Right-handed 310
Helix 4
AA4
A
165 173Right-handed alpha
Helix 5
AA5
A
192 200Right-handed 310
Helix 6
AA6
A
236 243Right-handed alpha
Helix 7
AA7
A
243 248Right-handed alpha
Helix 8
AA8
A
249 251Right-handed 310
Helix 9
AA9
A
257 264Right-handed alpha
Helix 10
AB1
A
288 309Right-handed alpha
Helix 11
AB2
B
95 107Right-handed alpha
Helix 12
AB3
B
111 124Right-handed alpha
Helix 13
AB4
B
145 152Right-handed 310
Helix 14
AB5
B
165 173Right-handed alpha
Helix 15
AB6
B
174 174Right-handed 310
Helix 16
AB7
B
192 200Right-handed 310
Helix 17
AB8
B
236 243Right-handed alpha
Helix 18
AB9
B
243 248Right-handed alpha
Helix 19
AC1
B
249 251Right-handed 310
Helix 20
AC2
B
257 264Right-handed alpha
Helix 21
AC3
B
288 309Right-handed alpha
Helix 22
AC4
C
84 88Right-handed 310
Helix 23
AC5
C
95 107Right-handed alpha
Helix 24
AC6
C
111 125Right-handed alpha
Helix 25
AC7
C
145 152Right-handed 310
Helix 26
AC8
C
165 173Right-handed alpha
Helix 27
AC9
C
191 200Right-handed 310
Helix 28
AD1
C
236 243Right-handed alpha
Helix 29
AD2
C
243 248Right-handed alpha
Helix 30
AD3
C
249 251Right-handed 310
Helix 31
AD4
C
257 264Right-handed alpha
Helix 32
AD5
C
288 309Right-handed alpha
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There are 3 sheets in PDB entry 5V44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
205 209anti-parallel
Strand 4
A
266 274anti-parallel
Strand 5
A
155 160anti-parallel
Strand 6
A
128 134anti-parallel
Strand 7
A
315 321parallel
Strand 8
A
327 334anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
205 209anti-parallel
Strand 4
B
266 274anti-parallel
Strand 5
B
155 160anti-parallel
Strand 6
B
128 134anti-parallel
Strand 7
B
315 321parallel
Strand 8
B
327 334anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 232first strand
Strand 2
C
211 215anti-parallel
Strand 3
C
205 209anti-parallel
Strand 4
C
266 274anti-parallel
Strand 5
C
155 160anti-parallel
Strand 6
C
128 134anti-parallel
Strand 7
C
315 321parallel
Strand 8
C
327 334anti-parallel
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