Analysis of interatomic Contacts of Structural Units in PDB entry:
5V47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V47 entry

There are 2 chains in PDB entry 5V47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 95ALA 342
B
 PHE 96ALA 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5V47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 114Right-handed alpha
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
152 159Right-handed 310
Helix 4
AA4
A
172 180Right-handed alpha
Helix 5
AA5
A
181 181Right-handed 310
Helix 6
AA6
A
199 207Right-handed 310
Helix 7
AA7
A
243 250Right-handed alpha
Helix 8
AA8
A
250 255Right-handed alpha
Helix 9
AA9
A
256 258Right-handed 310
Helix 10
AB1
A
264 271Right-handed alpha
Helix 11
AB2
A
295 309Right-handed alpha
Helix 12
AB3
A
309 316Right-handed alpha
Helix 13
AB4
B
102 114Right-handed alpha
Helix 14
AB5
B
118 132Right-handed alpha
Helix 15
AB6
B
152 159Right-handed 310
Helix 16
AB7
B
172 181Right-handed alpha
Helix 17
AB8
B
200 207Right-handed 310
Helix 18
AB9
B
243 250Right-handed alpha
Helix 19
AC1
B
250 255Right-handed alpha
Helix 20
AC2
B
256 258Right-handed 310
Helix 21
AC3
B
264 271Right-handed alpha
Helix 22
AC4
B
295 308Right-handed alpha
Helix 23
AC5
B
309 316Right-handed alpha
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There are 2 sheets in PDB entry 5V47. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 239first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
212 216anti-parallel
Strand 4
A
273 281anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
135 141anti-parallel
Strand 7
A
322 328parallel
Strand 8
A
334 341anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 239first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
212 216anti-parallel
Strand 4
B
273 281anti-parallel
Strand 5
B
162 167anti-parallel
Strand 6
B
135 141anti-parallel
Strand 7
B
322 328parallel
Strand 8
B
334 341anti-parallel
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