Analysis of interatomic Contacts of Structural Units in PDB entry:
5V4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V4A entry

There are 2 chains in PDB entry 5V4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ALA 272
B
 GLN 5ALA 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5V4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
76 80Right-handed 310
Helix 5
AA5
A
81 91Right-handed alpha
Helix 6
AA6
A
91 104Right-handed alpha
Helix 7
AA7
A
113 115Right-handed 310
Helix 8
AA8
A
126 139Right-handed alpha
Helix 9
AA9
A
175 178Right-handed 310
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
200 214Right-handed alpha
Helix 12
AB3
A
223 234Right-handed alpha
Helix 13
AB4
A
260 266Right-handed alpha
Helix 14
AB5
B
10 22Right-handed alpha
Helix 15
AB6
B
29 37Right-handed alpha
Helix 16
AB7
B
47 59Right-handed alpha
Helix 17
AB8
B
76 80Right-handed 310
Helix 18
AB9
B
81 91Right-handed alpha
Helix 19
AC1
B
91 104Right-handed alpha
Helix 20
AC2
B
113 115Right-handed 310
Helix 21
AC3
B
126 139Right-handed alpha
Helix 22
AC4
B
175 178Right-handed 310
Helix 23
AC5
B
179 191Right-handed alpha
Helix 24
AC6
B
200 214Right-handed alpha
Helix 25
AC7
B
223 234Right-handed alpha
Helix 26
AC8
B
260 266Right-handed alpha
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There are 4 sheets in PDB entry 5V4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
66 70parallel
Strand 3
A
110 111parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
195 199parallel
Strand 3
A
142 148parallel
Strand 4
A
165 171parallel
Strand 5
A
267 270parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
66 70parallel
Strand 3
B
110 111parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
195 199parallel
Strand 3
B
142 148parallel
Strand 4
B
165 171parallel
Strand 5
B
267 270parallel
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